STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ERI08783.1Hydrolase, TatD family; KEGG: bbe:BBR47_00870 9.1e-96 yabD; deoxyribonuclease K03424; Psort location: Cytoplasmic, score: 9.97. (257 aa)    
Predicted Functional Partners:
metG
methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
   0.961
ERI07122.1
Putative protein-export membrane protein SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.
 
  
 0.622
fliE
KEGG: apb:SAR116_0833 2.8e-05 flagellar hook-basal body complex subunit FliE K02408; Psort location: Cytoplasmic, score: 7.50.
    
 
 0.621
ERI08782.1
3D domain protein; Psort location: Cytoplasmic, score: 7.50.
     
 0.620
rsmA
Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
 
  
 0.619
ERI10021.1
KEGG: apb:SAR116_0406 3.9e-07 protein-export membrane protein SecD K03072; Psort location: Cytoplasmic, score: 7.50.
 
  
 0.611
rnmV
Ribonuclease M5; Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step.
  
  
 0.562
ERI08480.1
HD domain protein; KEGG: bsr:I33_3907 3.4e-144 YwfO K06885; Psort location: Cytoplasmic, score: 7.50.
  
    0.536
ERI08652.1
KEGG: pdn:HMPREF9137_1209 1.7e-195 glycosyltransferase group 2 family protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.497
ERI08787.1
Methyltransferase small domain protein; KEGG: bce:BC0040 4.3e-73 methyltransferase; Psort location: Cytoplasmic, score: 7.50.
 
    0.474
Your Current Organism:
Aneurinibacillus aneurinilyticus
NCBI taxonomy Id: 649747
Other names: A. aneurinilyticus ATCC 12856, Aneurinibacillus aneurinilyticus ATCC 12856, Aneurinibacillus aneurinilyticus DSM 5562, Aneurinibacillus aneurinilyticus str. ATCC 12856, Aneurinibacillus aneurinilyticus strain ATCC 12856
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