Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ERI07974.1 | ERI07975.1 | HMPREF0083_03982 | HMPREF0083_03983 | Hypothetical protein. | Hypothetical protein. | 0.572 |
ERI07974.1 | ERI07976.1 | HMPREF0083_03982 | HMPREF0083_03984 | Hypothetical protein. | Stage II sporulation protein P. | 0.568 |
ERI07974.1 | ERI07977.1 | HMPREF0083_03982 | HMPREF0083_03985 | Hypothetical protein. | Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.55. | 0.540 |
ERI07974.1 | gpr | HMPREF0083_03982 | HMPREF0083_03981 | Hypothetical protein. | GPR endopeptidase; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family. | 0.572 |
ERI07974.1 | rpsT | HMPREF0083_03982 | HMPREF0083_03980 | Hypothetical protein. | Ribosomal protein S20; Binds directly to 16S ribosomal RNA. | 0.773 |
ERI07975.1 | ERI07974.1 | HMPREF0083_03983 | HMPREF0083_03982 | Hypothetical protein. | Hypothetical protein. | 0.572 |
ERI07975.1 | ERI07976.1 | HMPREF0083_03983 | HMPREF0083_03984 | Hypothetical protein. | Stage II sporulation protein P. | 0.768 |
ERI07975.1 | ERI07977.1 | HMPREF0083_03983 | HMPREF0083_03985 | Hypothetical protein. | Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.55. | 0.726 |
ERI07975.1 | ERI07979.1 | HMPREF0083_03983 | HMPREF0083_03987 | Hypothetical protein. | Putative Xaa-Pro dipeptidase; KEGG: gym:GYMC10_5179 1.3e-94 peptidase M24; K01271 Xaa-Pro dipeptidase; Psort location: Cytoplasmic, score: 9.97. | 0.468 |
ERI07975.1 | gpr | HMPREF0083_03983 | HMPREF0083_03981 | Hypothetical protein. | GPR endopeptidase; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family. | 0.773 |
ERI07975.1 | lepA | HMPREF0083_03983 | HMPREF0083_03988 | Hypothetical protein. | GTP-binding protein LepA; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner. | 0.468 |
ERI07975.1 | rpsT | HMPREF0083_03983 | HMPREF0083_03980 | Hypothetical protein. | Ribosomal protein S20; Binds directly to 16S ribosomal RNA. | 0.572 |
ERI07976.1 | ERI07974.1 | HMPREF0083_03984 | HMPREF0083_03982 | Stage II sporulation protein P. | Hypothetical protein. | 0.568 |
ERI07976.1 | ERI07975.1 | HMPREF0083_03984 | HMPREF0083_03983 | Stage II sporulation protein P. | Hypothetical protein. | 0.768 |
ERI07976.1 | ERI07977.1 | HMPREF0083_03984 | HMPREF0083_03985 | Stage II sporulation protein P. | Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.55. | 0.744 |
ERI07976.1 | ERI07979.1 | HMPREF0083_03984 | HMPREF0083_03987 | Stage II sporulation protein P. | Putative Xaa-Pro dipeptidase; KEGG: gym:GYMC10_5179 1.3e-94 peptidase M24; K01271 Xaa-Pro dipeptidase; Psort location: Cytoplasmic, score: 9.97. | 0.471 |
ERI07976.1 | gpr | HMPREF0083_03984 | HMPREF0083_03981 | Stage II sporulation protein P. | GPR endopeptidase; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family. | 0.973 |
ERI07976.1 | lepA | HMPREF0083_03984 | HMPREF0083_03988 | Stage II sporulation protein P. | GTP-binding protein LepA; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner. | 0.725 |
ERI07976.1 | rpsT | HMPREF0083_03984 | HMPREF0083_03980 | Stage II sporulation protein P. | Ribosomal protein S20; Binds directly to 16S ribosomal RNA. | 0.632 |
ERI07977.1 | ERI07974.1 | HMPREF0083_03985 | HMPREF0083_03982 | Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.55. | Hypothetical protein. | 0.540 |
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