STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ERI07720.1Sporulation lipoprotein YhcN/YlaJ; KEGG: pru:PRU_0055 0.0037 rluB; ribosomal large subunit pseudouridine synthase B; K06178 23S rRNA pseudouridine2605 synthase. (373 aa)    
Predicted Functional Partners:
ERI09045.1
Transcriptional regulator, LuxR family; KEGG: ava:Ava_2845 5.1e-69 serine/threonine protein kinase and signal transduction histidine kinase; Psort location: CytoplasmicMembrane, score: 8.78.
  
 
 0.753
ERI07719.1
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
       0.608
ERI03952.1
Transcriptional regulator, LuxR family; KEGG: ava:Ava_0083 3.9e-237 serine/threonine protein kinase and signal transduction histidine kinase K00908; Psort location: Cytoplasmic, score: 9.97.
  
 0.583
ERI05034.1
DNA gyrase, B subunit protein; KEGG: bbe:BBR47_32630 2.1e-206 parE; DNA topoisomerase IV subunit B K02622; Psort location: Cytoplasmic, score: 9.67.
    
 
 0.571
gyrB
DNA gyrase, B subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.
    
 
 0.571
ERI05716.1
Hypothetical protein.
    
   0.506
ERI07610.1
Outer membrane protein A family protein; KEGG: rsi:Runsl_3101 1.0e-14 Pyrophosphate-energized proton pump K15987; Psort location: CytoplasmicMembrane, score: 9.68.
  
 
 0.467
ERI08606.1
Pyruvate kinase; KEGG: bbe:BBR47_13840 6.8e-210 pyk; pyruvate kinase K00873; Psort location: Cytoplasmic, score: 7.50.
    
 0.452
Your Current Organism:
Aneurinibacillus aneurinilyticus
NCBI taxonomy Id: 649747
Other names: A. aneurinilyticus ATCC 12856, Aneurinibacillus aneurinilyticus ATCC 12856, Aneurinibacillus aneurinilyticus DSM 5562, Aneurinibacillus aneurinilyticus str. ATCC 12856, Aneurinibacillus aneurinilyticus strain ATCC 12856
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