STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
araGArabinose import ATP-binding protein AraG. (505 aa)    
Predicted Functional Partners:
ytfT
Inner membrane ABC transporter permease protein ytfT; Belongs to the binding-protein-dependent transport system permease family.
 0.999
yjfF
Inner membrane ABC transporter permease protein yjfF; Belongs to the binding-protein-dependent transport system permease family.
 0.999
ytfQ
ABC transporter periplasmic-binding protein ytfQ precursor.
 0.997
rbsB
D-ribose-binding periplasmic protein precursor.
 
 
 0.964
rbsK_2
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
 
  
 0.817
rbsK_1
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
  
  
 0.791
CUN72015.1
Uncharacterized response regulatory protein SA0215.
 
    0.706
CUN72262.1
L-fucose isomerase and related proteins.
       0.659
CUO33535.1
Inner membrane ABC transporter permease protein YjfF.
     0.633
yehU
Probable sensor-like histidine kinase YehU.
 
     0.631
Your Current Organism:
Anaerostipes hadrus
NCBI taxonomy Id: 649756
Other names: A. hadrus, ATCC 29173, Anaerostipes sp. 5/1/63FAA, Clostridiales bacterium SSC/2, DSM 3319, Eubacterium hadrum, JCM 9980, VP 82-52, VPI B2-52, butyrate-producing bacterium SS2/1, butyrate-producing bacterium SSC/2
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