Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CUN56616.1 | CUN79628.1 | ERS852387_00535 | ERS852387_00962 | Radical SAM protein. | 16S rRNA m(4)C1402 methyltranserfase. | 0.865 |
CUN79628.1 | CUN56616.1 | ERS852387_00962 | ERS852387_00535 | 16S rRNA m(4)C1402 methyltranserfase. | Radical SAM protein. | 0.865 |
CUN79628.1 | CUO01931.1 | ERS852387_00962 | ERS852387_01361 | 16S rRNA m(4)C1402 methyltranserfase. | Coproporphyrinogen III oxidase. | 0.640 |
CUN79628.1 | mraZ | ERS852387_00962 | ERS852387_02393 | 16S rRNA m(4)C1402 methyltranserfase. | Cell division protein MraZ; Belongs to the MraZ family. | 0.742 |
CUN79628.1 | rpsF | ERS852387_00962 | ERS852387_01797 | 16S rRNA m(4)C1402 methyltranserfase. | 30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.599 |
CUN79628.1 | rpsG | ERS852387_00962 | ERS852387_00227 | 16S rRNA m(4)C1402 methyltranserfase. | 30S ribosomal protein S7. | 0.576 |
CUN79628.1 | rpsI | ERS852387_00962 | ERS852387_01602 | 16S rRNA m(4)C1402 methyltranserfase. | 30S ribosomal protein S9. | 0.601 |
CUN79628.1 | rpsJ | ERS852387_00962 | ERS852387_01638 | 16S rRNA m(4)C1402 methyltranserfase. | 30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.590 |
CUN79628.1 | rpsL | ERS852387_00962 | ERS852387_00228 | 16S rRNA m(4)C1402 methyltranserfase. | 30S ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.588 |
CUN79628.1 | rpsO | ERS852387_00962 | ERS852387_01371 | 16S rRNA m(4)C1402 methyltranserfase. | 30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.578 |
CUN79628.1 | rpsP | ERS852387_00962 | ERS852387_01557 | 16S rRNA m(4)C1402 methyltranserfase. | BS17; Belongs to the bacterial ribosomal protein bS16 family. | 0.596 |
CUO01931.1 | CUN79628.1 | ERS852387_01361 | ERS852387_00962 | Coproporphyrinogen III oxidase. | 16S rRNA m(4)C1402 methyltranserfase. | 0.640 |
mraZ | CUN79628.1 | ERS852387_02393 | ERS852387_00962 | Cell division protein MraZ; Belongs to the MraZ family. | 16S rRNA m(4)C1402 methyltranserfase. | 0.742 |
rpsF | CUN79628.1 | ERS852387_01797 | ERS852387_00962 | 30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 16S rRNA m(4)C1402 methyltranserfase. | 0.599 |
rpsF | rpsG | ERS852387_01797 | ERS852387_00227 | 30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 30S ribosomal protein S7. | 0.999 |
rpsF | rpsI | ERS852387_01797 | ERS852387_01602 | 30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 30S ribosomal protein S9. | 0.999 |
rpsF | rpsJ | ERS852387_01797 | ERS852387_01638 | 30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.999 |
rpsF | rpsL | ERS852387_01797 | ERS852387_00228 | 30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 30S ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.999 |
rpsF | rpsO | ERS852387_01797 | ERS852387_01371 | 30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.999 |
rpsF | rpsP | ERS852387_01797 | ERS852387_01557 | 30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | BS17; Belongs to the bacterial ribosomal protein bS16 family. | 0.999 |
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