Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EFB33413.1 | EFB33415.1 | HMPREF0971_00176 | HMPREF0971_00178 | Hypothetical protein; Psort location: Cytoplasmic, score: 8.96. | YbbR-like protein. | 0.797 |
EFB33413.1 | HslR | HMPREF0971_00176 | HMPREF0971_00183 | Hypothetical protein; Psort location: Cytoplasmic, score: 8.96. | S4 domain protein. | 0.657 |
EFB33413.1 | coaE | HMPREF0971_00176 | HMPREF0971_00177 | Hypothetical protein; Psort location: Cytoplasmic, score: 8.96. | dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family. | 0.774 |
EFB33413.1 | nusB | HMPREF0971_00176 | HMPREF0971_00180 | Hypothetical protein; Psort location: Cytoplasmic, score: 8.96. | Transcription antitermination factor NusB; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons. | 0.785 |
EFB33413.1 | pth | HMPREF0971_00176 | HMPREF0971_00182 | Hypothetical protein; Psort location: Cytoplasmic, score: 8.96. | aminoacyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family. | 0.602 |
EFB33413.1 | rplY | HMPREF0971_00176 | HMPREF0971_00181 | Hypothetical protein; Psort location: Cytoplasmic, score: 8.96. | Ribosomal protein L25, Ctc-form; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. | 0.586 |
EFB33413.1 | yajC | HMPREF0971_00176 | HMPREF0971_00179 | Hypothetical protein; Psort location: Cytoplasmic, score: 8.96. | Preprotein translocase, YajC subunit. | 0.760 |
EFB33415.1 | EFB33413.1 | HMPREF0971_00178 | HMPREF0971_00176 | YbbR-like protein. | Hypothetical protein; Psort location: Cytoplasmic, score: 8.96. | 0.797 |
EFB33415.1 | HslR | HMPREF0971_00178 | HMPREF0971_00183 | YbbR-like protein. | S4 domain protein. | 0.689 |
EFB33415.1 | coaE | HMPREF0971_00178 | HMPREF0971_00177 | YbbR-like protein. | dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family. | 0.831 |
EFB33415.1 | nusB | HMPREF0971_00178 | HMPREF0971_00180 | YbbR-like protein. | Transcription antitermination factor NusB; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons. | 0.844 |
EFB33415.1 | pth | HMPREF0971_00178 | HMPREF0971_00182 | YbbR-like protein. | aminoacyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family. | 0.643 |
EFB33415.1 | rplY | HMPREF0971_00178 | HMPREF0971_00181 | YbbR-like protein. | Ribosomal protein L25, Ctc-form; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. | 0.643 |
EFB33415.1 | yajC | HMPREF0971_00178 | HMPREF0971_00179 | YbbR-like protein. | Preprotein translocase, YajC subunit. | 0.841 |
HslR | EFB33413.1 | HMPREF0971_00183 | HMPREF0971_00176 | S4 domain protein. | Hypothetical protein; Psort location: Cytoplasmic, score: 8.96. | 0.657 |
HslR | EFB33415.1 | HMPREF0971_00183 | HMPREF0971_00178 | S4 domain protein. | YbbR-like protein. | 0.689 |
HslR | coaE | HMPREF0971_00183 | HMPREF0971_00177 | S4 domain protein. | dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family. | 0.643 |
HslR | nusB | HMPREF0971_00183 | HMPREF0971_00180 | S4 domain protein. | Transcription antitermination factor NusB; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons. | 0.668 |
HslR | pth | HMPREF0971_00183 | HMPREF0971_00182 | S4 domain protein. | aminoacyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family. | 0.845 |
HslR | rplY | HMPREF0971_00183 | HMPREF0971_00181 | S4 domain protein. | Ribosomal protein L25, Ctc-form; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. | 0.925 |
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