Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RpoE_1Sigma-70 region 2; KEGG: btl:BALH_3229 5.1e-09 sigW; RNA polymerase sigma-70 factor, ECF subfamily K00960; Psort location: Cytoplasmic, score: 8.96. (167 aa)    
Predicted Functional Partners:
EFB31261.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
       0.800
RpoE_4
Sigma-70 region 2; KEGG: shn:Shewana3_0763 9.5e-17 RNA polymerase, sigma-24 subunit, ECF subfamily K00058; Psort location: Cytoplasmic, score: 8.96; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.579
SigM_2
Sigma-70 region 2; KEGG: shn:Shewana3_0763 3.7e-15 RNA polymerase, sigma-24 subunit, ECF subfamily K00058; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.522
EFB31260.1
Hypothetical protein.
       0.517
EFB31264.1
Hypothetical protein.
       0.482
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.425
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.418
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.412
Your Current Organism:
Prevotella oris
NCBI taxonomy Id: 649760
Other names: P. oris F0302, Prevotella oris F0302, Prevotella oris str. F0302, Prevotella oris strain F0302
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