Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
traJ-3Conjugative transposon TraJ protein; Psort location: CytoplasmicMembrane, score: 10.00. (345 aa)    
Predicted Functional Partners:
EFB31329.1
Conjugative transposon protein TraI.
 
    0.944
traK-4
Conjugative transposon TraK protein.
 
  
 0.943
traG-3
Conjugation system ATPase, TraG family.
 
   
 0.925
traM-4
Conjugative transposon TraM protein.
 
     0.879
traG-4
Conjugation system ATPase, TraG family; Psort location: Cytoplasmic, score: 8.96.
 
   
 0.878
EFB31189.1
Conjugative transposon protein TraE; Psort location: CytoplasmicMembrane, score: 9.46.
 
     0.871
EFB31188.1
Conjugative transposon protein TraF.
 
     0.868
traN-4
Conjugative transposon TraN protein.
 
     0.863
EFB31192.1
Conjugative transposon protein TraA; Psort location: Cytoplasmic, score: 8.96.
 
     0.825
EFB31195.1
Relaxase/mobilization nuclease domain protein; Psort location: Cytoplasmic, score: 8.96.
 
     0.808
Your Current Organism:
Prevotella oris
NCBI taxonomy Id: 649760
Other names: P. oris F0302, Prevotella oris F0302, Prevotella oris str. F0302, Prevotella oris strain F0302
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