Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EFB31026.1 | EFB31027.1 | HMPREF0971_02585 | HMPREF0971_02586 | Hypothetical protein. | Hypothetical protein. | 0.547 |
EFB31026.1 | ftsY | HMPREF0971_02585 | HMPREF0971_02587 | Hypothetical protein. | Signal recognition particle-docking protein FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). | 0.457 |
EFB31026.1 | hup-2 | HMPREF0971_02585 | HMPREF0971_02589 | Hypothetical protein. | DNA-binding protein HU; Belongs to the bacterial histone-like protein family. | 0.413 |
EFB31026.1 | hup-3 | HMPREF0971_02585 | HMPREF0971_02590 | Hypothetical protein. | DNA-binding protein HU; KEGG: ddi:DDB0191487 5.1e-09 kinX; LISK family protein kinase K05743; Psort location: Cytoplasmic, score: 8.96; Belongs to the bacterial histone-like protein family. | 0.413 |
EFB31026.1 | rimO | HMPREF0971_02585 | HMPREF0971_02588 | Hypothetical protein. | Ribosomal protein S12 methylthiotransferase RimO; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily. | 0.422 |
EFB31027.1 | EFB31026.1 | HMPREF0971_02586 | HMPREF0971_02585 | Hypothetical protein. | Hypothetical protein. | 0.547 |
EFB31027.1 | ftsY | HMPREF0971_02586 | HMPREF0971_02587 | Hypothetical protein. | Signal recognition particle-docking protein FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). | 0.634 |
EFB31027.1 | hup-2 | HMPREF0971_02586 | HMPREF0971_02589 | Hypothetical protein. | DNA-binding protein HU; Belongs to the bacterial histone-like protein family. | 0.565 |
EFB31027.1 | hup-3 | HMPREF0971_02586 | HMPREF0971_02590 | Hypothetical protein. | DNA-binding protein HU; KEGG: ddi:DDB0191487 5.1e-09 kinX; LISK family protein kinase K05743; Psort location: Cytoplasmic, score: 8.96; Belongs to the bacterial histone-like protein family. | 0.565 |
EFB31027.1 | rimO | HMPREF0971_02586 | HMPREF0971_02588 | Hypothetical protein. | Ribosomal protein S12 methylthiotransferase RimO; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily. | 0.580 |
ftsY | EFB31026.1 | HMPREF0971_02587 | HMPREF0971_02585 | Signal recognition particle-docking protein FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). | Hypothetical protein. | 0.457 |
ftsY | EFB31027.1 | HMPREF0971_02587 | HMPREF0971_02586 | Signal recognition particle-docking protein FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). | Hypothetical protein. | 0.634 |
ftsY | hup-2 | HMPREF0971_02587 | HMPREF0971_02589 | Signal recognition particle-docking protein FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). | DNA-binding protein HU; Belongs to the bacterial histone-like protein family. | 0.791 |
ftsY | hup-3 | HMPREF0971_02587 | HMPREF0971_02590 | Signal recognition particle-docking protein FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). | DNA-binding protein HU; KEGG: ddi:DDB0191487 5.1e-09 kinX; LISK family protein kinase K05743; Psort location: Cytoplasmic, score: 8.96; Belongs to the bacterial histone-like protein family. | 0.734 |
ftsY | rimO | HMPREF0971_02587 | HMPREF0971_02588 | Signal recognition particle-docking protein FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). | Ribosomal protein S12 methylthiotransferase RimO; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily. | 0.828 |
hup-2 | EFB31026.1 | HMPREF0971_02589 | HMPREF0971_02585 | DNA-binding protein HU; Belongs to the bacterial histone-like protein family. | Hypothetical protein. | 0.413 |
hup-2 | EFB31027.1 | HMPREF0971_02589 | HMPREF0971_02586 | DNA-binding protein HU; Belongs to the bacterial histone-like protein family. | Hypothetical protein. | 0.565 |
hup-2 | ftsY | HMPREF0971_02589 | HMPREF0971_02587 | DNA-binding protein HU; Belongs to the bacterial histone-like protein family. | Signal recognition particle-docking protein FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). | 0.791 |
hup-2 | hup-3 | HMPREF0971_02589 | HMPREF0971_02590 | DNA-binding protein HU; Belongs to the bacterial histone-like protein family. | DNA-binding protein HU; KEGG: ddi:DDB0191487 5.1e-09 kinX; LISK family protein kinase K05743; Psort location: Cytoplasmic, score: 8.96; Belongs to the bacterial histone-like protein family. | 0.793 |
hup-2 | hup-4 | HMPREF0971_02589 | HMPREF0971_02592 | DNA-binding protein HU; Belongs to the bacterial histone-like protein family. | DNA-binding protein HU; Belongs to the bacterial histone-like protein family. | 0.622 |
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