Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EEX17816.1 | EEX19457.1 | HMPREF0973_02290 | HMPREF0973_00398 | Transporter, major facilitator family protein; Psort location: CytoplasmicMembrane, score: 10.00. | Oligopeptide transporter, OPT family; Psort location: CytoplasmicMembrane, score: 10.00. | 0.408 |
EEX19457.1 | EEX17816.1 | HMPREF0973_00398 | HMPREF0973_02290 | Oligopeptide transporter, OPT family; Psort location: CytoplasmicMembrane, score: 10.00. | Transporter, major facilitator family protein; Psort location: CytoplasmicMembrane, score: 10.00. | 0.408 |
EEX19457.1 | EEX19458.1 | HMPREF0973_00398 | HMPREF0973_00399 | Oligopeptide transporter, OPT family; Psort location: CytoplasmicMembrane, score: 10.00. | Methyltransferase, YaeB family; KEGG: eci:UTI89_C0211 3.1e-34 yaeB; hypothetical protein YaeB. | 0.686 |
EEX19457.1 | EEX19459.1 | HMPREF0973_00398 | HMPREF0973_00400 | Oligopeptide transporter, OPT family; Psort location: CytoplasmicMembrane, score: 10.00. | Hypothetical protein. | 0.403 |
EEX19457.1 | pdxB | HMPREF0973_00398 | HMPREF0973_00397 | Oligopeptide transporter, OPT family; Psort location: CytoplasmicMembrane, score: 10.00. | 4-phosphoerythronate dehydrogenase; KEGG: bfs:BF1389 2.8e-111 ldhA, hslI, htpH; putative D-lactate dehydrogenase K03778; Psort location: Cytoplasmic, score: 9.97; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | 0.441 |
EEX19458.1 | EEX19457.1 | HMPREF0973_00399 | HMPREF0973_00398 | Methyltransferase, YaeB family; KEGG: eci:UTI89_C0211 3.1e-34 yaeB; hypothetical protein YaeB. | Oligopeptide transporter, OPT family; Psort location: CytoplasmicMembrane, score: 10.00. | 0.686 |
EEX19458.1 | EEX19459.1 | HMPREF0973_00399 | HMPREF0973_00400 | Methyltransferase, YaeB family; KEGG: eci:UTI89_C0211 3.1e-34 yaeB; hypothetical protein YaeB. | Hypothetical protein. | 0.548 |
EEX19459.1 | EEX19457.1 | HMPREF0973_00400 | HMPREF0973_00398 | Hypothetical protein. | Oligopeptide transporter, OPT family; Psort location: CytoplasmicMembrane, score: 10.00. | 0.403 |
EEX19459.1 | EEX19458.1 | HMPREF0973_00400 | HMPREF0973_00399 | Hypothetical protein. | Methyltransferase, YaeB family; KEGG: eci:UTI89_C0211 3.1e-34 yaeB; hypothetical protein YaeB. | 0.548 |
pdxB | EEX19457.1 | HMPREF0973_00397 | HMPREF0973_00398 | 4-phosphoerythronate dehydrogenase; KEGG: bfs:BF1389 2.8e-111 ldhA, hslI, htpH; putative D-lactate dehydrogenase K03778; Psort location: Cytoplasmic, score: 9.97; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | Oligopeptide transporter, OPT family; Psort location: CytoplasmicMembrane, score: 10.00. | 0.441 |