STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rlmHPutative rRNA large subunit m3Psi methyltransferase RlmH; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA; Belongs to the RNA methyltransferase RlmH family. (156 aa)    
Predicted Functional Partners:
EEX18132.1
Hypothetical protein; KEGG: syd:Syncc9605_2601 0.0014 possible 3-hydroxyacid dehydrogenase K00020; Psort location: Cytoplasmic, score: 8.96.
       0.805
EEX18134.1
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; KEGG: bfs:BF3121 6.2e-52 putative lipopolysaccharide biosynthesis-related protein K03270; Psort location: Cytoplasmic, score: 8.96.
       0.805
maf
Septum formation protein Maf; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.
       0.805
rsfS
Iojap-like protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation.
  
  
 0.701
kdsB
3-deoxy-D-manno-octulosonate cytidylyltransferase; Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria.
       0.592
EEX18589.1
Putative RNA methyltransferase, RsmD family; KEGG: fnu:FN1329 6.8e-23 methyltransferase K00599; Psort location: Cytoplasmic, score: 8.96.
 
   
 0.534
EEX19538.1
NOL1/NOP2/sun family protein; KEGG: lsl:LSL_0999 1.1e-45 putative 23S rRNA m(5)C methyltransferase K00599.
     
 0.483
nadD
Nicotinate-nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD).
  
  
 0.430
rsmI
S-adenosylmethionine-dependent methyltransferase, YraL family; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
 
   
 0.409
ribD
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
     
 0.406
Your Current Organism:
Prevotella veroralis
NCBI taxonomy Id: 649761
Other names: P. veroralis F0319, Prevotella veroralis F0319, Prevotella veroralis str. F0319, Prevotella veroralis strain F0319
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