STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEZ61945.1Pseudouridylate synthase; KEGG: gsu:GSU1403 2.8e-56 rluB; ribosomal large subunit pseudouridine synthase B K06178; Psort location: Cytoplasmic, score: 8.87; Belongs to the pseudouridine synthase RsuA family. (256 aa)    
Predicted Functional Partners:
cmk
Cytidylate kinase; KEGG: ace:Acel_1234 1.4e-52 cytidylate kinase K00945; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.958
scpB
Segregation and condensation protein B; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves.
 
  
 0.939
EEZ61943.1
ScpA/B protein; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves.
  
  
 0.878
der
Ribosome biogenesis GTPase Der; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
 
  
 0.862
EEZ61942.1
Peptidase, M50 family; KEGG: reh:H16_A1202 6.2e-29 Zn-dependent membrane-bound protease, M50 family; Psort location: CytoplasmicMembrane, score: 9.99.
       0.785
EEZ61732.1
Hypothetical protein; KEGG: spk:MGAS9429_Spy0678 2.9e-21 methyltransferase K00599; Psort location: Cytoplasmic, score: 8.87.
  
 
 0.737
xth
Exodeoxyribonuclease III; KEGG: lmf:LMOf2365_1807 3.0e-84 exoA; exodeoxyribonuclease K01142; Psort location: Cytoplasmic, score: 9.98.
  
    0.695
EEZ61941.1
KEGG: ret:RHE_PB00012 1.3e-115 probable ABC transporter, ATP-binding protein K06022; Psort location: CytoplasmicMembrane, score: 9.49.
 
     0.686
aroA
3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate.
       0.594
EEZ61948.1
Acyltransferase; KEGG: pmt:PMT1998 1.1e-17 plsC; putative 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655; Psort location: Cytoplasmic, score: 8.87.
       0.515
Your Current Organism:
Slackia exigua
NCBI taxonomy Id: 649764
Other names: S. exigua ATCC 700122, Slackia exigua ATCC 700122, Slackia exigua str. ATCC 700122, Slackia exigua strain ATCC 700122
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