STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEZ61965.1Cyclic nucleotide-binding domain protein; Psort location: Cytoplasmic, score: 8.87. (218 aa)    
Predicted Functional Partners:
nifJ
KEGG: ctc:CTC01741 0. pyruvate-flavodoxin oxidoreductase K03737.
    
 0.902
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.884
EEZ61780.1
AMP-binding enzyme; KEGG: bpm:BURPS1710b_A2151 9.8e-81 pchF; pyochelin synthetase K01932; Psort location: Cytoplasmic, score: 9.98.
  
 
 0.797
EEZ61961.1
Hypothetical protein; KEGG: fal:FRAAL1923 3.2e-05 ribonuclease E homolog; Psort location: CytoplasmicMembrane, score: 9.26.
   
   0.783
EEZ61962.1
Tat pathway signal sequence domain protein.
     
 0.774
EEZ61964.1
KEGG: aha:AHA_2937 3.9e-27 taurine ABC transporter, ATP-binding protein; Psort location: CytoplasmicMembrane, score: 9.49.
     
 0.774
EEZ61963.1
KEGG: rha:RHA1_ro08170 5.0e-06 ABC transporter, permease component; Psort location: CytoplasmicMembrane, score: 9.97.
       0.773
EEZ62004.1
FAD dependent oxidoreductase; KEGG: ctc:CTC02436 2.6e-101 glycerol-3-phosphate dehydrogenase K00111; Psort location: Cytoplasmic, score: 8.87.
   
 
 0.717
EEZ61785.1
AMP-binding enzyme; KEGG: rpb:RPB_0580 6.6e-15 AMP-dependent synthetase and ligase K01897; Psort location: Cytoplasmic, score: 8.87.
  
 
 0.704
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.657
Your Current Organism:
Slackia exigua
NCBI taxonomy Id: 649764
Other names: S. exigua ATCC 700122, Slackia exigua ATCC 700122, Slackia exigua str. ATCC 700122, Slackia exigua strain ATCC 700122
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.