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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
carBKEGG: afu:AF1274 0. carB; carbamoyl-phosphate synthase large chain K01955; Psort location: Cytoplasmic, score: 8.87; Belongs to the CarB family. (1091 aa)    
Predicted Functional Partners:
carA
KEGG: pca:Pcar_1613 9.0e-99 carbamoyl-phosphate synthase small subunit K01956; Psort location: Cytoplasmic, score: 8.87; Belongs to the CarA family.
 0.999
pyrB
KEGG: pca:Pcar_1615 2.2e-81 aspartate carbamoyltransferase K00609; Psort location: Cytoplasmic, score: 9.98; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
 
 0.999
argG
KEGG: sth:STH2874 4.7e-125 argininosuccinate synthase K01940; Psort location: Cytoplasmic, score: 8.87; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
 
 
 0.992
pyrC
Amidohydrolase family protein; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate; Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily.
 
 0.987
argF-2
KEGG: mta:Moth_2286 6.9e-69 ornithine carbamoyltransferase K00611; Psort location: Cytoplasmic, score: 9.65.
 
 
 0.968
purF
Amidophosphoribosyltransferase; Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine.
  
 
 0.960
nifJ
KEGG: ctc:CTC01741 0. pyruvate-flavodoxin oxidoreductase K03737.
    
 0.938
argF-3
Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.
 
 
 0.935
glmS
Glutamine-fructose-6-phosphate transaminase (isomerizing); Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.
   
 0.924
EEZ60468.1
Glutamine synthetase, beta-grasp domain protein; KEGG: deh:cbdb_A1050 6.5e-128 glnA; glutamine synthetase, type I K01915; Psort location: Cytoplasmic, score: 9.98.
  
 
 0.918
Your Current Organism:
Slackia exigua
NCBI taxonomy Id: 649764
Other names: S. exigua ATCC 700122, Slackia exigua ATCC 700122, Slackia exigua str. ATCC 700122, Slackia exigua strain ATCC 700122
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