STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEZ62171.1TIGR00252 family protein; KEGG: sat:SYN_00772 2.4e-18 endonuclease; Psort location: Cytoplasmic, score: 8.87; Belongs to the UPF0102 family. (164 aa)    
Predicted Functional Partners:
EEZ62170.1
Mg chelatase-like protein; KEGG: rru:Rru_A3589 2.6e-94 Mg chelatase-related protein K07391; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.948
dprA
DNA protecting protein DprA; KEGG: sma:SAV2916 0.0014 thrB; putative homoserine kinase K00872; Psort location: Cytoplasmic, score: 8.87.
 
    0.897
xerC
Phage integrase SAM-like domain protein; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
       0.679
trmFO
tRNA:m(5)U-54 methyltransferase; Catalyzes the folate-dependent formation of 5-methyl-uridine at position 54 (M-5-U54) in all tRNAs; Belongs to the MnmG family. TrmFO subfamily.
       0.679
EEZ62251.1
ComF/gntX family protein; KEGG: reh:H16_A0339 4.1e-16 predicted amidophosphoribosyltransferase; Psort location: Cytoplasmic, score: 8.87.
 
    0.624
rnhB
Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
       0.603
rplS
Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
   
   0.532
EEZ62039.1
Putative ACR, COG1399.
  
     0.430
Your Current Organism:
Slackia exigua
NCBI taxonomy Id: 649764
Other names: S. exigua ATCC 700122, Slackia exigua ATCC 700122, Slackia exigua str. ATCC 700122, Slackia exigua strain ATCC 700122
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.