STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cas3CRISPR-associated helicase Cas3; KEGG: afu:AF0071 8.0e-13 ATP-dependent RNA helicase, putative; Psort location: Cytoplasmic, score: 8.87. (946 aa)    
Predicted Functional Partners:
casA
CRISPR system CASCADE complex protein CasA; Psort location: Cytoplasmic, score: 8.87.
 
 0.992
casC
CRISPR system CASCADE complex protein CasC; Psort location: Cytoplasmic, score: 8.87.
 
 
 0.979
casE
CRISPR system CASCADE complex protein CasE; Psort location: Cytoplasmic, score: 8.87.
 
 
 
 0.976
casD
CRISPR system CASCADE complex protein CasD.
 
 
 0.925
cas1
CRISPR-associated endonuclease Cas1; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
 
  
 0.835
cas2
CRISPR-associated endoribonuclease Cas2; KEGG: aae:aq_932 2.2e-26 dnaQ; DNA polymerase III epsilon subunit K02342; Psort location: Cytoplasmic, score: 8.87.
 
     0.684
Your Current Organism:
Slackia exigua
NCBI taxonomy Id: 649764
Other names: S. exigua ATCC 700122, Slackia exigua ATCC 700122, Slackia exigua str. ATCC 700122, Slackia exigua strain ATCC 700122
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.