STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xerDTyrosine recombinase XerD; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. (315 aa)    
Predicted Functional Partners:
pyrG
CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates.
  
  
 0.791
nadK
NAD(+)/NADH kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.
       0.747
nifJ
KEGG: ctc:CTC01741 0. pyruvate-flavodoxin oxidoreductase K03737.
    
  0.736
EEZ62153.1
FtsK/SpoIIIE family protein; KEGG: reh:H16_A1582 1.4e-107 DNA segregation ATPase FtsK/SpoIIIE related protein; Psort location: CytoplasmicMembrane, score: 9.99.
  
   
 0.663
EEZ61915.1
Putative integral membrane protein MviN; Psort location: CytoplasmicMembrane, score: 9.99.
     
 0.516
mraZ
Putative protein MraZ; Belongs to the MraZ family.
 
     0.496
EEZ61734.1
Hydrolase, NUDIX family; KEGG: bha:BH1524 6.7e-13 ADP-ribose pyrophosphatase, putative K01515; Psort location: Cytoplasmic, score: 8.87.
  
  
 0.454
EEZ62251.1
ComF/gntX family protein; KEGG: reh:H16_A0339 4.1e-16 predicted amidophosphoribosyltransferase; Psort location: Cytoplasmic, score: 8.87.
   
    0.451
EEZ62051.1
KEGG: cno:NT01CX_0626 4.5e-33 prephenate dehydrogenase K00210; Psort location: Cytoplasmic, score: 8.87.
  
    0.447
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
   
    0.440
Your Current Organism:
Slackia exigua
NCBI taxonomy Id: 649764
Other names: S. exigua ATCC 700122, Slackia exigua ATCC 700122, Slackia exigua str. ATCC 700122, Slackia exigua strain ATCC 700122
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