Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EEZ61928.1 | proS | HMPREF0762_00570 | HMPREF0762_01837 | YbaK/EbsC protein; KEGG: bcl:ABC2234 0.00010 proS, pro; prolyl-tRNA synthetase K01881; Psort location: Cytoplasmic, score: 8.87; Belongs to the prolyl-tRNA editing family. YbaK/EbsC subfamily. | proline--tRNA ligase; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacy [...] | 0.429 |
EEZ61928.1 | rplJ | HMPREF0762_00570 | HMPREF0762_00572 | YbaK/EbsC protein; KEGG: bcl:ABC2234 0.00010 proS, pro; prolyl-tRNA synthetase K01881; Psort location: Cytoplasmic, score: 8.87; Belongs to the prolyl-tRNA editing family. YbaK/EbsC subfamily. | Ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. | 0.409 |
EEZ61928.1 | rplL | HMPREF0762_00570 | HMPREF0762_00571 | YbaK/EbsC protein; KEGG: bcl:ABC2234 0.00010 proS, pro; prolyl-tRNA synthetase K01881; Psort location: Cytoplasmic, score: 8.87; Belongs to the prolyl-tRNA editing family. YbaK/EbsC subfamily. | Ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family. | 0.516 |
proS | EEZ61928.1 | HMPREF0762_01837 | HMPREF0762_00570 | proline--tRNA ligase; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacy [...] | YbaK/EbsC protein; KEGG: bcl:ABC2234 0.00010 proS, pro; prolyl-tRNA synthetase K01881; Psort location: Cytoplasmic, score: 8.87; Belongs to the prolyl-tRNA editing family. YbaK/EbsC subfamily. | 0.429 |
rplJ | EEZ61928.1 | HMPREF0762_00572 | HMPREF0762_00570 | Ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. | YbaK/EbsC protein; KEGG: bcl:ABC2234 0.00010 proS, pro; prolyl-tRNA synthetase K01881; Psort location: Cytoplasmic, score: 8.87; Belongs to the prolyl-tRNA editing family. YbaK/EbsC subfamily. | 0.409 |
rplJ | rplL | HMPREF0762_00572 | HMPREF0762_00571 | Ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. | Ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family. | 0.998 |
rplL | EEZ61928.1 | HMPREF0762_00571 | HMPREF0762_00570 | Ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family. | YbaK/EbsC protein; KEGG: bcl:ABC2234 0.00010 proS, pro; prolyl-tRNA synthetase K01881; Psort location: Cytoplasmic, score: 8.87; Belongs to the prolyl-tRNA editing family. YbaK/EbsC subfamily. | 0.516 |
rplL | rplJ | HMPREF0762_00571 | HMPREF0762_00572 | Ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family. | Ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. | 0.998 |