STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
acnAAconitate hydratase 1; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate. (883 aa)    
Predicted Functional Partners:
EEZ61149.1
KEGG: mta:Moth_1122 3.6e-111 citrate (Si)-synthase K01647; Psort location: Cytoplasmic, score: 9.98.
 
 0.991
EEZ60862.1
Isocitrate dehydrogenase, NADP-dependent; KEGG: tte:TTE0387 2.6e-149 icd; Isocitrate dehydrogenases K00031; Psort location: Cytoplasmic, score: 8.87; Belongs to the isocitrate and isopropylmalate dehydrogenases family.
  
 0.973
nifJ
KEGG: ctc:CTC01741 0. pyruvate-flavodoxin oxidoreductase K03737.
    
 0.943
EEZ60411.1
enoyl-CoA hydratase/isomerase family protein; KEGG: msm:MSMEG_5198 1.2e-46 carnitinyl-CoA dehydratase K01726; Psort location: Cytoplasmic, score: 8.87.
   
 0.847
rplS
Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
   
 
 0.833
rpmF
Ribosomal protein L32; Psort location: Extracellular, score: 8.82.
   
   0.790
rpsP
Ribosomal protein S16; Psort location: Cytoplasmic, score: 8.87; Belongs to the bacterial ribosomal protein bS16 family.
   
   0.787
rpmA
Ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.
   
   0.787
rpmJ
Ribosomal protein L36; Psort location: Extracellular, score: 8.82; Belongs to the bacterial ribosomal protein bL36 family.
   
 
 0.785
rpsF
Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
   
 
 0.784
Your Current Organism:
Slackia exigua
NCBI taxonomy Id: 649764
Other names: S. exigua ATCC 700122, Slackia exigua ATCC 700122, Slackia exigua str. ATCC 700122, Slackia exigua strain ATCC 700122
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.