STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEZ61275.1KEGG: gme:Gmet_3331 5.8e-104 nickel-dependent hydrogenase, large subunit K05922; Psort location: Cytoplasmic, score: 8.87. (557 aa)    
Predicted Functional Partners:
EEZ61276.1
Tat pathway signal sequence domain protein; KEGG: gsu:GSU0782 2.2e-63 nickel-dependent hydrogenase, small subunit K06282; Psort location: Cytoplasmic, score: 8.87.
 
 0.999
EEZ61274.1
Putative Ni/Fe-hydrogenase, b-type cytochrome subunit; KEGG: hac:Hac_0746 2.1e-12 hyaC; Ni/Fe hydrogenase cytochrome b subunit K00122; Psort location: CytoplasmicMembrane, score: 9.99.
 
 
 0.995
nifJ
KEGG: ctc:CTC01741 0. pyruvate-flavodoxin oxidoreductase K03737.
   
 
 0.982
EEZ62203.1
Hydrogenase maturation protease; KEGG: gme:Gmet_3329 1.8e-13 peptidase M52, hydrogenase maturation peptidase K03605; Psort location: Cytoplasmic, score: 8.87.
 
 
 0.857
hypD
Hydrogenase expression/formation protein HypD; Psort location: Cytoplasmic, score: 8.87.
 
 
 0.852
hypA
Putative hydrogenase nickel insertion protein HypA; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase.
 
 
 0.852
hypE
KEGG: cch:Cag_0556 1.1e-88 hypE; hydrogenase expression/formation protein HypE K04655; Psort location: Cytoplasmic, score: 8.87.
 
   
 0.784
hypF
Carbamoyltransferase HypF; KEGG: tma:TM1564 8.5e-12 acylphosphatase K01512; Psort location: Cytoplasmic, score: 8.87.
 
 
 
 0.770
EEZ60491.1
FAD binding domain protein; KEGG: mbu:Mbur_2437 7.7e-44 protein of unknown function DUF224 K08263; Psort location: Cytoplasmic, score: 9.98.
  
 0.729
era
Ribosome biogenesis GTPase Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.
       0.671
Your Current Organism:
Slackia exigua
NCBI taxonomy Id: 649764
Other names: S. exigua ATCC 700122, Slackia exigua ATCC 700122, Slackia exigua str. ATCC 700122, Slackia exigua strain ATCC 700122
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.