STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEZ61321.1Putative rod shape-determining protein RodA; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the SEDS family. (373 aa)    
Predicted Functional Partners:
mrdA
Penicillin-binding protein 2; KEGG: ppd:Ppro_2545 1.7e-81 peptidoglycan glycosyltransferase K05364; Psort location: CytoplasmicMembrane, score: 9.49.
 
 0.976
EEZ61325.1
Cell shape determining protein, MreB/Mrl family; KEGG: hpa:HPAG1_1318 1.5e-80 rod shape-determining protein K01529; Psort location: Cytoplasmic, score: 9.98.
 
 
 0.926
mreC
Rod shape-determining protein MreC; Involved in formation and maintenance of cell shape.
 
  
 0.922
EEZ61908.1
Penicillin-binding protein, transpeptidase domain protein; KEGG: ace:Acel_1004 3.4e-76 peptidoglycan glycosyltransferase K05364; Psort location: CytoplasmicMembrane, score: 9.82.
 
 0.894
murC
UDP-N-acetylmuramate--L-alanine ligase; Cell wall formation; Belongs to the MurCDEF family.
 
  
 0.810
murG
Undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily.
  
 0.805
murD
UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family.
 
  
 0.764
mreD
Rod shape-determining protein MreD; Psort location: CytoplasmicMembrane, score: 9.99.
  
  
 0.729
mraY
phospho-N-acetylmuramoyl-pentapeptide- transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily.
 
  
 0.710
EEZ61900.1
POTRA domain protein, FtsQ-type; Essential cell division protein.
  
 
 0.703
Your Current Organism:
Slackia exigua
NCBI taxonomy Id: 649764
Other names: S. exigua ATCC 700122, Slackia exigua ATCC 700122, Slackia exigua str. ATCC 700122, Slackia exigua strain ATCC 700122
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.