STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
glfKEGG: lsl:LSL_1548 1.1e-125 glf; UDP-galactopyranose mutase K01854; Psort location: Cytoplasmic, score: 8.87. (390 aa)    
Predicted Functional Partners:
galE
UDP-glucose 4-epimerase; KEGG: yps:YPTB1171 6.7e-103 galE, galD; UDP-glucose 4-epimerase K01784; Psort location: Cytoplasmic, score: 8.87; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
    
 0.952
EEZ61353.1
Acetyltransferase, GNAT family; KEGG: ctc:CTC01188 2.3e-15 acetyltransferase K00680; Psort location: Cytoplasmic, score: 8.87.
       0.651
EEZ61336.1
ABC-2 type transporter; Psort location: CytoplasmicMembrane, score: 9.99.
  
  
 0.612
EEZ61355.1
Hypothetical protein.
       0.560
EEZ61352.1
Sodium:neurotransmitter symporter family protein; Psort location: CytoplasmicMembrane, score: 9.99; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.
       0.472
EEZ62074.1
Glycosyltransferase, group 2 family protein; KEGG: lsl:LSL_0011 1.3e-74 rfaG; glycosyltransferase K00754; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.435
EEZ61737.1
Glycosyltransferase, group 2 family protein; KEGG: lsl:LSL_0011 2.5e-57 rfaG; glycosyltransferase K00754.
 
  
 0.400
Your Current Organism:
Slackia exigua
NCBI taxonomy Id: 649764
Other names: S. exigua ATCC 700122, Slackia exigua ATCC 700122, Slackia exigua str. ATCC 700122, Slackia exigua strain ATCC 700122
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.