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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEZ61432.1ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: bce:BC2539 1.8e-54 two-component sensor kinase YxdK; Psort location: CytoplasmicMembrane, score: 9.49. (324 aa)    
Predicted Functional Partners:
EEZ61433.1
KEGG: rha:RHA1_ro05622 1.9e-25 response regulator (protein-glutamate methylesterase) K07669; Psort location: Cytoplasmic, score: 9.98.
  0.980
EEZ61430.1
Efflux ABC transporter, permease protein; Psort location: CytoplasmicMembrane, score: 9.99.
 
     0.879
EEZ60545.1
Response regulator receiver domain protein; KEGG: fal:FRAAL1628 1.9e-41 response regulator in two-component regulatory system; Psort location: Cytoplasmic, score: 9.65.
 
  0.854
EEZ61245.1
KEGG: rha:RHA1_ro05622 3.0e-36 response regulator (protein-glutamate methylesterase) K07669; Psort location: Cytoplasmic, score: 9.98.
  
  0.842
EEZ61431.1
KEGG: lwe:lwe2133 2.5e-55 ABC transporter, ATP-binding protein K06020; Psort location: CytoplasmicMembrane, score: 9.49.
 
     0.837
EEZ60785.1
Response regulator receiver domain protein; KEGG: ava:Ava_3369 3.1e-41 two component transcriptional regulator, winged helix family; Psort location: Cytoplasmic, score: 9.98.
 
  0.836
EEZ61785.1
AMP-binding enzyme; KEGG: rpb:RPB_0580 6.6e-15 AMP-dependent synthetase and ligase K01897; Psort location: Cytoplasmic, score: 8.87.
 
 0.828
EEZ61075.1
Response regulator receiver domain protein; KEGG: ava:Ava_3369 2.4e-50 two component transcriptional regulator, winged helix family; Psort location: Cytoplasmic, score: 9.98.
 
  0.809
EEZ61822.1
Response regulator receiver domain protein; KEGG: fal:FRAAL1628 3.1e-41 response regulator in two-component regulatory system; Psort location: Cytoplasmic, score: 9.98.
 
  0.801
EEZ61593.1
Response regulator receiver domain protein; KEGG: fal:FRAAL1628 6.3e-43 response regulator in two-component regulatory system; Psort location: Cytoplasmic, score: 9.98.
 
  0.800
Your Current Organism:
Slackia exigua
NCBI taxonomy Id: 649764
Other names: S. exigua ATCC 700122, Slackia exigua ATCC 700122, Slackia exigua str. ATCC 700122, Slackia exigua strain ATCC 700122
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