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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEZ61510.1KEGG: mta:Moth_1872 8.3e-231 DNA polymerase III, alpha subunit K02337; Psort location: Cytoplasmic, score: 9.98. (1194 aa)    
Predicted Functional Partners:
holA
KEGG: gme:Gmet_2298 1.3e-26 DNA polymerase III, delta subunit K02340.
  
 0.986
dnaN
DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]
    
 0.986
EEZ62263.1
KEGG: gsu:GSU2230 6.2e-36 holB; DNA polymerase III, delta prime subunit K02341; Psort location: Cytoplasmic, score: 8.87.
 
 0.981
dnaX
KEGG: art:Arth_0555 7.4e-88 DNA polymerase III, subunits gamma and tau K00961; Psort location: Cytoplasmic, score: 8.87.
 
 0.979
EEZ61106.1
Single-strand binding family protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.
 
 
 0.913
EEZ61121.1
Putative DnaQ family exonuclease/DinG family helicase; KEGG: sth:STH1713 5.3e-94 ATP-dependent DNA helicase K03722; Psort location: Cytoplasmic, score: 8.87.
  
 
 0.876
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
       0.822
recJ
KEGG: tte:TTE1191 5.3e-94 recJ; Single-stranded DNA-specific exonuclease K07462; Psort location: Cytoplasmic, score: 8.87.
  
 
 0.753
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
   
 0.697
cas2
CRISPR-associated endoribonuclease Cas2; KEGG: aae:aq_932 2.2e-26 dnaQ; DNA polymerase III epsilon subunit K02342; Psort location: Cytoplasmic, score: 8.87.
    
 0.662
Your Current Organism:
Slackia exigua
NCBI taxonomy Id: 649764
Other names: S. exigua ATCC 700122, Slackia exigua ATCC 700122, Slackia exigua str. ATCC 700122, Slackia exigua strain ATCC 700122
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