STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEZ61576.1SNARE-like domain protein; KEGG: sab:SAB2386 6.4e-11 probable alkaline phosphatase K01077; Psort location: CytoplasmicMembrane, score: 9.99. (218 aa)    
Predicted Functional Partners:
dnaX
KEGG: art:Arth_0555 7.4e-88 DNA polymerase III, subunits gamma and tau K00961; Psort location: Cytoplasmic, score: 8.87.
       0.674
EEZ61241.1
Efflux ABC transporter, permease protein; KEGG: rru:Rru_A3236 3.9e-50 hypothetical protein K06020; Psort location: CytoplasmicMembrane, score: 9.99.
   
    0.576
EEZ60463.1
Efflux ABC transporter, permease protein; KEGG: cch:Cag_0337 4.9e-52 ATPase K06020; Psort location: CytoplasmicMembrane, score: 10.00.
   
    0.576
EEZ61574.1
DNA-binding protein, YbaB/EbfC family; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection.
       0.456
recR
Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.
       0.443
EEZ61577.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
     
 0.404
Your Current Organism:
Slackia exigua
NCBI taxonomy Id: 649764
Other names: S. exigua ATCC 700122, Slackia exigua ATCC 700122, Slackia exigua str. ATCC 700122, Slackia exigua strain ATCC 700122
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.