STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEZ61578.1Pyridoxal-dependent decarboxylase, C-terminal sheet domain protein; KEGG: rme:Rmet_1110 4.1e-32 Orn/DAP/Arg decarboxylase 2 K01586; Psort location: Cytoplasmic, score: 8.87. (396 aa)    
Predicted Functional Partners:
EEZ61577.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
 
  
  0.931
EEZ61579.1
AMP-binding enzyme; KEGG: cje:Cj1307 1.5e-82 putative amino acid activating enzyme K01932; Psort location: Cytoplasmic, score: 9.98; Belongs to the ATP-dependent AMP-binding enzyme family.
 
    0.914
EEZ61580.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
 
     0.870
EEZ61581.1
MBOAT family protein; KEGG: hne:HNE_2072 3.2e-55 algI; alginate biosynthesis protein AlgI K00680; Psort location: CytoplasmicMembrane, score: 9.99; Belongs to the membrane-bound acyltransferase family.
 
     0.835
EEZ61582.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.711
dapB
Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family.
 
 
 0.703
dapA
Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).
 
  
 0.685
murE
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; Catalyzes the addition of an amino acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan.
     
 0.645
argD
Aminotransferase, acetylornithine/succinylornithine family; KEGG: mmp:MMP1101 4.6e-79 aminotransferase (subgroup II) similar to acetylornithine aminotransferase K00818:K05830; Psort location: Cytoplasmic, score: 8.87; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
    
 0.609
EEZ60368.1
Trypsin; KEGG: blo:BL0555 4.2e-62 degP; possible DO serine protease; Psort location: Cytoplasmic, score: 8.87.
  
  
  0.555
Your Current Organism:
Slackia exigua
NCBI taxonomy Id: 649764
Other names: S. exigua ATCC 700122, Slackia exigua ATCC 700122, Slackia exigua str. ATCC 700122, Slackia exigua strain ATCC 700122
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