STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEZ61661.1DNA-binding helix-turn-helix protein; Psort location: CytoplasmicMembrane, score: 9.26. (198 aa)    
Predicted Functional Partners:
EEZ60723.1
DNA-binding helix-turn-helix protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.772
nifJ
KEGG: ctc:CTC01741 0. pyruvate-flavodoxin oxidoreductase K03737.
  
 
  0.580
EEZ61662.1
Hypothetical protein.
   
   0.561
EEZ60866.1
DNA-binding helix-turn-helix protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.505
EEZ62201.1
Transcriptional regulator, TetR family; Psort location: Cytoplasmic, score: 8.87.
  
     0.475
EEZ61709.1
HipA domain protein; Psort location: Cytoplasmic, score: 8.87.
  
 
 0.446
Your Current Organism:
Slackia exigua
NCBI taxonomy Id: 649764
Other names: S. exigua ATCC 700122, Slackia exigua ATCC 700122, Slackia exigua str. ATCC 700122, Slackia exigua strain ATCC 700122
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.