STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hypEKEGG: cch:Cag_0556 1.1e-88 hypE; hydrogenase expression/formation protein HypE K04655; Psort location: Cytoplasmic, score: 8.87. (341 aa)    
Predicted Functional Partners:
hypD
Hydrogenase expression/formation protein HypD; Psort location: Cytoplasmic, score: 8.87.
 
 
 0.996
hypC
Hydrogenase assembly chaperone HypC/HupF; Psort location: Cytoplasmic, score: 8.87.
 
 
 0.992
hypF
Carbamoyltransferase HypF; KEGG: tma:TM1564 8.5e-12 acylphosphatase K01512; Psort location: Cytoplasmic, score: 8.87.
 
 
 0.991
EEZ61275.1
KEGG: gme:Gmet_3331 5.8e-104 nickel-dependent hydrogenase, large subunit K05922; Psort location: Cytoplasmic, score: 8.87.
 
   
 0.784
EEZ61048.1
Putative nickel-responsive transcriptional regulator NikR; Transcriptional regulator; Belongs to the transcriptional regulatory CopG/NikR family.
 
     0.689
EEZ61276.1
Tat pathway signal sequence domain protein; KEGG: gsu:GSU0782 2.2e-63 nickel-dependent hydrogenase, small subunit K06282; Psort location: Cytoplasmic, score: 8.87.
 
   
 0.663
nifJ
KEGG: ctc:CTC01741 0. pyruvate-flavodoxin oxidoreductase K03737.
     
 0.607
EEZ61047.1
Hypothetical protein; KEGG: neu:NE1854 0.0019 argH; argininosuccinate lyase K01755; Psort location: Cytoplasmic, score: 8.87.
       0.593
hypB
Hydrogenase accessory protein HypB; KEGG: reh:H16_A1087 1.6e-07 ureG; UreA amidohydrolase (urease) regulatory and maturation protein UreG; Psort location: Cytoplasmic, score: 9.98.
 
  
 0.507
EEZ61053.1
Putative glucose-6-phosphate isomerase; KEGG: rpc:RPC_3670 1.2e-71 transaldolase K00616:K01810; Psort location: Cytoplasmic, score: 9.98.
       0.505
Your Current Organism:
Slackia exigua
NCBI taxonomy Id: 649764
Other names: S. exigua ATCC 700122, Slackia exigua ATCC 700122, Slackia exigua str. ATCC 700122, Slackia exigua strain ATCC 700122
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.