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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dapBDihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family. (234 aa)    
Predicted Functional Partners:
dapA
Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).
 
 
 0.994
dapD
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase; Catalyzes the transfer of an acetyl group from acetyl-CoA to tetrahydrodipicolinate.
 
 
 0.983
EEZ61153.1
KEGG: spn:SP_1978 5.8e-136 diaminopimelate decarboxylase K01586; Psort location: Cytoplasmic, score: 8.87.
 
 
 0.762
asd
Aspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family.
 
  
 0.736
EEZ61578.1
Pyridoxal-dependent decarboxylase, C-terminal sheet domain protein; KEGG: rme:Rmet_1110 4.1e-32 Orn/DAP/Arg decarboxylase 2 K01586; Psort location: Cytoplasmic, score: 8.87.
 
 
 0.703
EEZ61887.1
tRNA nucleotidyltransferase/poly(A) polymerase family protein; KEGG: ctc:CTC01205 1.3e-74 tRNA nucleotidyltransferase (CCA-adding enzyme) K00974; Psort location: Cytoplasmic, score: 8.87; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
  
    0.699
EEZ62255.1
Amino acid kinase family; KEGG: cno:NT01CX_0187 1.1e-107 aspartate kinase, putative K00928; Psort location: Cytoplasmic, score: 8.87; Belongs to the aspartokinase family.
 
 
 0.680
EEZ61150.1
Aminotransferase, class I/II; KEGG: bsu:BG10205 1.5e-73 patA, uat; aminotransferase K00841; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.649
arcT
Dipeptidase; KEGG: sai:Saci_1837 1.4e-47 aspartate aminotransferase K00812; Psort location: Cytoplasmic, score: 8.87.
    
 0.598
thrB
Homoserine kinase; Catalyzes the ATP-dependent phosphorylation of L-homoserine to L-homoserine phosphate; Belongs to the GHMP kinase family. Homoserine kinase subfamily.
  
  
 0.501
Your Current Organism:
Slackia exigua
NCBI taxonomy Id: 649764
Other names: S. exigua ATCC 700122, Slackia exigua ATCC 700122, Slackia exigua str. ATCC 700122, Slackia exigua strain ATCC 700122
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