STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sufCKEGG: ava:Ava_0425 6.0e-54 sufC; FeS assembly ATPase SufC K09013; Psort location: CytoplasmicMembrane, score: 9.49. (295 aa)    
Predicted Functional Partners:
sufB
FeS assembly protein SufB; Psort location: Cytoplasmic, score: 8.87.
 
 0.998
EEZ61207.1
SufB/sufD domain protein; Psort location: Cytoplasmic, score: 8.87.
 
 
 0.995
sufS
Cysteine desulfurase, SufS subfamily; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
 
  
 0.990
EEZ61205.1
SUF system FeS assembly protein, NifU family; KEGG: rxy:Rxyl_1354 2.0e-06 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.972
EEZ60531.1
NifU-like N-terminal domain protein; KEGG: rxy:Rxyl_1354 0.00011 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566; Psort location: Cytoplasmic, score: 8.87.
  
  
 0.745
EEZ61210.1
Transcriptional regulator, Rrf2 family; KEGG: ama:AM656 6.4e-11 aminotransferase, class V K04487; Psort location: Cytoplasmic, score: 8.87.
     
 0.558
EEZ61211.1
Hypothetical protein; KEGG: lsa:LSA0137 1.7e-65 putative DNA helicase, superfamily I K01529; Psort location: Cytoplasmic, score: 8.87.
       0.544
EEZ61212.1
Hypothetical protein; Psort location: Extracellular, score: 8.82.
       0.544
nnrD
YjeF domain protein; Catalyzes the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. Together with NAD(P)HX epimerase, which catalyzes the epimerization of the S-and R-forms, the enzyme allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration.
       0.491
glmS
Glutamine-fructose-6-phosphate transaminase (isomerizing); Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.
       0.462
Your Current Organism:
Slackia exigua
NCBI taxonomy Id: 649764
Other names: S. exigua ATCC 700122, Slackia exigua ATCC 700122, Slackia exigua str. ATCC 700122, Slackia exigua strain ATCC 700122
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.