STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEZ61012.1Hypothetical protein; Psort location: Cytoplasmic, score: 8.87. (326 aa)    
Predicted Functional Partners:
EEZ61013.1
SNARE-like domain protein; KEGG: hch:HCH_01003 3.4e-08 probable mercuric reductase K00520; Psort location: CytoplasmicMembrane, score: 9.99.
       0.801
EEZ61011.1
Hypothetical protein; KEGG: eci:UTI89_C0735 8.8e-05 tolA; membrane spanning protein TolA K03646; Psort location: Cytoplasmic, score: 8.87.
       0.554
xth
Exodeoxyribonuclease III; KEGG: lmf:LMOf2365_1807 3.0e-84 exoA; exodeoxyribonuclease K01142; Psort location: Cytoplasmic, score: 9.98.
       0.503
EEZ61015.1
Hypothetical protein.
       0.413
EEZ61016.1
Putative ATP synthase F0, A subunit; KEGG: shn:Shewana3_0031 7.3e-31 potassium uptake protein, TrkH family K00961; Psort location: CytoplasmicMembrane, score: 10.00.
       0.413
EEZ61017.1
Hypothetical protein; KEGG: fal:FRAAL1923 0.0015 ribonuclease E homolog.
       0.413
rsgA
Ribosome small subunit-dependent GTPase A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily.
       0.413
Your Current Organism:
Slackia exigua
NCBI taxonomy Id: 649764
Other names: S. exigua ATCC 700122, Slackia exigua ATCC 700122, Slackia exigua str. ATCC 700122, Slackia exigua strain ATCC 700122
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.