STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hydFHydrogenase maturation GTPase HydF; KEGG: reh:H16_A0103 8.3e-09 predicted GTPase K01529; Psort location: Cytoplasmic, score: 8.87. (403 aa)    
Predicted Functional Partners:
hydG
Iron-only hydrogenase maturation rSAM protein HydG; KEGG: cpf:CPF_2775 1.6e-16 radical SAM domain protein K01012; Psort location: Cytoplasmic, score: 8.87.
   
 0.983
hydE
Iron-only hydrogenase maturation rSAM protein HydE; KEGG: bth:BT1835 2.0e-94 biotin synthetase K01012; Psort location: Cytoplasmic, score: 8.87.
   
 0.973
EEZ60853.1
Putative iron-only hydrogenase system regulator; Psort location: Cytoplasmic, score: 8.87.
 
     0.909
EEZ60845.1
Hydrogenase, Fe-only; KEGG: tte:TTE0894 8.1e-146 nuoG; NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) K00336; Psort location: Cytoplasmic, score: 8.87.
 
   
 0.771
dnaG
DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.
   
    0.653
gpsA
KEGG: nca:Noca_3293 9.4e-65 glycerol-3-phosphate dehydrogenase (NAD(P)(+)); Psort location: Cytoplasmic, score: 8.87; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.
  
  
 0.651
EEZ61977.1
Hydrogenase, Fe-only; KEGG: mta:Moth_1717 3.2e-135 iron hydrogenase, small subunit K00336; Psort location: Cytoplasmic, score: 8.87.
 
   
 0.634
cmk
Cytidylate kinase; KEGG: ace:Acel_1234 1.4e-52 cytidylate kinase K00945; Psort location: Cytoplasmic, score: 8.87.
  
  
 0.538
typA
KEGG: hac:Hac_1074 2.9e-157 typA; GTP-binding protein TypA/BipA homolog; Psort location: Cytoplasmic, score: 9.98.
   
  
 0.527
EEZ61945.1
Pseudouridylate synthase; KEGG: gsu:GSU1403 2.8e-56 rluB; ribosomal large subunit pseudouridine synthase B K06178; Psort location: Cytoplasmic, score: 8.87; Belongs to the pseudouridine synthase RsuA family.
  
  
 0.501
Your Current Organism:
Slackia exigua
NCBI taxonomy Id: 649764
Other names: S. exigua ATCC 700122, Slackia exigua ATCC 700122, Slackia exigua str. ATCC 700122, Slackia exigua strain ATCC 700122
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.