STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEZ60415.1Hypothetical protein; KEGG: fra:Francci3_1934 0.0082 beta-ketoacyl synthase K00647; Psort location: Cytoplasmic, score: 8.87. (193 aa)    
Predicted Functional Partners:
cysS
cysteine--tRNA ligase; KEGG: dsy:DSY0447 1.1e-116 hypothetical protein K01883; Psort location: Cytoplasmic, score: 9.98; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
    0.929
EEZ60416.1
RNA methyltransferase, TrmH family, group 3; KEGG: cac:CAC3154 2.2e-49 rRNA methylase, YACO B.subtilis ortholog K03218; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.
  
  
 0.908
rlmH
Putative rRNA large subunit m3Psi methyltransferase RlmH; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA; Belongs to the RNA methyltransferase RlmH family.
       0.773
ispD-2
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D- erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate (MEP).
 
     0.566
EEZ60413.1
Hypothetical protein; KEGG: fal:FRAAL1923 1.2e-26 ribonuclease E homolog; Psort location: Extracellular, score: 7.62.
       0.553
ispF
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4-diphosphocytidyl-2- C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP).
       0.536
EEZ60593.1
RNA methyltransferase, TrmH family; KEGG: blo:BL0865 1.4e-68 tnsR; possible tRNA/rRNA methyltransferase K00599; Psort location: Cytoplasmic, score: 8.87.
  
  
 0.516
EEZ61447.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
 
     0.413
Your Current Organism:
Slackia exigua
NCBI taxonomy Id: 649764
Other names: S. exigua ATCC 700122, Slackia exigua ATCC 700122, Slackia exigua str. ATCC 700122, Slackia exigua strain ATCC 700122
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.