STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hypBHydrogenase accessory protein HypB; KEGG: reh:H16_A1087 1.6e-07 ureG; UreA amidohydrolase (urease) regulatory and maturation protein UreG; Psort location: Cytoplasmic, score: 9.98. (217 aa)    
Predicted Functional Partners:
hypA
Putative hydrogenase nickel insertion protein HypA; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase.
 
 
 0.986
EEZ61671.1
Respiratory-chain NADH dehydrogenase, 30 Kd subunit; KEGG: eci:UTI89_C3084 1.0e-202 hycE; formate hydrogenlyase subunit 5 precursor; Psort location: Cytoplasmic, score: 8.87.
   
 
 0.919
hypD
Hydrogenase expression/formation protein HypD; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.790
EEZ60375.1
KEGG: dvu:DVU2569 2.3e-29 peptidyl-prolyl cis-trans isomerase, FKBP-type K01802; Psort location: Cytoplasmic, score: 8.87.
    
 
 0.737
nadE
NAD+ synthase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses ammonia as a nitrogen source.
       0.727
hypC
Hydrogenase assembly chaperone HypC/HupF; Psort location: Cytoplasmic, score: 8.87.
  
  
 0.704
EEZ61276.1
Tat pathway signal sequence domain protein; KEGG: gsu:GSU0782 2.2e-63 nickel-dependent hydrogenase, small subunit K06282; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.609
EEZ61275.1
KEGG: gme:Gmet_3331 5.8e-104 nickel-dependent hydrogenase, large subunit K05922; Psort location: Cytoplasmic, score: 8.87.
 
   
 0.558
tatA
Twin arginine-targeting protein translocase, TatA/E family; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.
     
 0.532
tatC
Twin arginine-targeting protein translocase TatC; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides.
       0.525
Your Current Organism:
Slackia exigua
NCBI taxonomy Id: 649764
Other names: S. exigua ATCC 700122, Slackia exigua ATCC 700122, Slackia exigua str. ATCC 700122, Slackia exigua strain ATCC 700122
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.