STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEZ60466.1Restriction endonuclease; Psort location: Cytoplasmic, score: 8.87. (344 aa)    
Predicted Functional Partners:
EEZ60465.1
Repeat protein.
       0.620
EEZ60467.1
Transcriptional regulatory protein, C-terminal domain protein; KEGG: eci:UTI89_C0420 1.3e-19 phoB; positive response regulator for pho regulon K07657; Psort location: Cytoplasmic, score: 9.65.
       0.598
EEZ60468.1
Glutamine synthetase, beta-grasp domain protein; KEGG: deh:cbdb_A1050 6.5e-128 glnA; glutamine synthetase, type I K01915; Psort location: Cytoplasmic, score: 9.98.
       0.586
EEZ60469.1
CobB/CobQ-like protein; KEGG: lsl:LSL_0587 4.0e-34 cobyric acid synthase K01957; Psort location: Cytoplasmic, score: 8.87.
       0.586
EEZ60470.1
Mur ligase middle domain protein; KEGG: sab:SAB1824c 2.1e-60 probable UDP-N-acetylmuramyl tripeptide synthase K01924; Psort location: Cytoplasmic, score: 8.87.
       0.586
glnA
Glutamate--ammonia ligase, catalytic domain protein; KEGG: cac:CAC2658 1.7e-191 glnA; glutamine synthetase type III K01915; Psort location: Cytoplasmic, score: 8.87.
       0.582
aspS
aspartate--tRNA ligase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily.
 
     0.467
Your Current Organism:
Slackia exigua
NCBI taxonomy Id: 649764
Other names: S. exigua ATCC 700122, Slackia exigua ATCC 700122, Slackia exigua str. ATCC 700122, Slackia exigua strain ATCC 700122
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