STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEZ60501.1Peptidase C1-like family; KEGG: efa:EF0302 6.1e-109 pepC; aminopeptidase C K01372; Psort location: Cytoplasmic, score: 9.98; Belongs to the peptidase C1 family. (455 aa)    
Predicted Functional Partners:
EEZ60502.1
Isochorismatase family protein; KEGG: tac:Ta0454 2.5e-23 isochorismatase K05993.
       0.458
trpS
tryptophan--tRNA ligase; KEGG: blo:BL0600 1.5e-137 trpS; tryptophanyl-tRNA synthetase K01867; Psort location: Cytoplasmic, score: 9.98; Belongs to the class-I aminoacyl-tRNA synthetase family.
 
     0.406
Your Current Organism:
Slackia exigua
NCBI taxonomy Id: 649764
Other names: S. exigua ATCC 700122, Slackia exigua ATCC 700122, Slackia exigua str. ATCC 700122, Slackia exigua strain ATCC 700122
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