STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEZ60520.1TIGR00730 family protein; KEGG: reh:H16_A1025 3.9e-27 predicted Rossmann fold nucleotide-binding protein / lysine decarboxylase family protein K01592; Psort location: Cytoplasmic, score: 8.87; Belongs to the LOG family. (204 aa)    
Predicted Functional Partners:
EEZ60519.1
Metallo-beta-lactamase domain protein; KEGG: tth:TTC1064 2.5e-12 metal dependent hydrolase; Psort location: Cytoplasmic, score: 8.87.
       0.773
EEZ60521.1
Hydrolyase, tartrate beta subunit/fumarate domain protein, Fe-S type; KEGG: chy:CHY_0062 4.1e-55 fumarate hydratase K01678; Psort location: Cytoplasmic, score: 8.87; overlaps another CDS with the same product name.
       0.497
EEZ60522.1
Hydrolyase, tartrate alpha subunit/fumarate domain protein, Fe-S type; KEGG: ctc:CTC02562 7.9e-84 fumarate hydratase subunit A K01677; Psort location: Cytoplasmic, score: 8.87; overlaps another CDS with the same product name.
       0.497
tadA
Cytidine and deoxycytidylate deaminase zinc-binding region; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.
    
  0.494
cadA
Cadmium-exporting ATPase; KEGG: bce:BC0596 7.6e-166 zinc-transporting ATPase K01534; Psort location: CytoplasmicMembrane, score: 10.00.
       0.490
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
    
 0.476
EEZ61646.1
Amidohydrolase family protein; KEGG: tbd:Tbd_0947 8.7e-46 chlorohydrolase/cytosine deaminase family protein K05394; Psort location: Cytoplasmic, score: 8.87.
    
  0.475
purB
Adenylosuccinate lyase; KEGG: lil:LA3080 3.3e-110 purB; adenylosuccinate lyase K01756; Psort location: Cytoplasmic, score: 8.87.
  
 
  0.452
mtnN
MTA/SAH nucleosidase; Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S-adenosylhomocysteine (SAH/AdoHcy) to adenine and the corresponding thioribose, 5'- methylthioribose and S-ribosylhomocysteine, respectively. Belongs to the PNP/UDP phosphorylase family. MtnN subfamily.
   
 
 0.450
adk
Adenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family.
    
  0.447
Your Current Organism:
Slackia exigua
NCBI taxonomy Id: 649764
Other names: S. exigua ATCC 700122, Slackia exigua ATCC 700122, Slackia exigua str. ATCC 700122, Slackia exigua strain ATCC 700122
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.