STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEZ60525.1KEGG: rru:Rru_A1450 1.6e-06 transcriptional regulator, ArsR family; Psort location: Cytoplasmic, score: 8.87. (106 aa)    
Predicted Functional Partners:
EEZ60524.1
Hypothetical protein; KEGG: fnu:FN0259 2.6e-14 zinc-transporting ATPase K01534; Psort location: Cytoplasmic, score: 8.87.
 
   
 0.750
cadA
Cadmium-exporting ATPase; KEGG: bce:BC0596 7.6e-166 zinc-transporting ATPase K01534; Psort location: CytoplasmicMembrane, score: 10.00.
 
  
 0.679
EEZ60526.1
Hypothetical protein; Psort location: Extracellular, score: 8.82.
       0.613
EEZ61739.1
Copper-exporting ATPase; KEGG: tde:TDE0008 1.5e-194 copper-translocating P-type ATPase K01533; Psort location: CytoplasmicMembrane, score: 9.99.
  
  
 0.450
EEZ60836.1
Transcriptional regulator, Fur family; Psort location: Cytoplasmic, score: 9.98; Belongs to the Fur family.
  
  
 0.409
EEZ60521.1
Hydrolyase, tartrate beta subunit/fumarate domain protein, Fe-S type; KEGG: chy:CHY_0062 4.1e-55 fumarate hydratase K01678; Psort location: Cytoplasmic, score: 8.87; overlaps another CDS with the same product name.
       0.402
EEZ60522.1
Hydrolyase, tartrate alpha subunit/fumarate domain protein, Fe-S type; KEGG: ctc:CTC02562 7.9e-84 fumarate hydratase subunit A K01677; Psort location: Cytoplasmic, score: 8.87; overlaps another CDS with the same product name.
       0.402
Your Current Organism:
Slackia exigua
NCBI taxonomy Id: 649764
Other names: S. exigua ATCC 700122, Slackia exigua ATCC 700122, Slackia exigua str. ATCC 700122, Slackia exigua strain ATCC 700122
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.