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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEZ60562.1Hydrolase, TatD family; KEGG: atu:Atu5019 1.6e-28 putative Mg-dependent DNase K03424; Psort location: Cytoplasmic, score: 8.87. (282 aa)    
Predicted Functional Partners:
EEZ60560.1
ThiF family protein; KEGG: aph:APH_1174 1.4e-18 thiF; adenylyltransferase ThiF; Psort location: Cytoplasmic, score: 8.87.
     0.638
EEZ60561.1
Acetyltransferase, GNAT family; KEGG: msm:MSMEG_1579 0.0098 rimI; ribosomal-protein-alanine acetyltransferase K00676; Psort location: Cytoplasmic, score: 8.87.
       0.499
secD
Export membrane protein SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.
 
  
 0.438
Your Current Organism:
Slackia exigua
NCBI taxonomy Id: 649764
Other names: S. exigua ATCC 700122, Slackia exigua ATCC 700122, Slackia exigua str. ATCC 700122, Slackia exigua strain ATCC 700122
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.