Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
L083_0005 | gnd2 | L083_0005 | L083_0003 | Zn-ribbon-containing RNA-binding protein. | 6-phosphogluconate dehydrogenase, decarboxylating. | 0.911 |
L083_0005 | recF | L083_0005 | L083_0004 | Zn-ribbon-containing RNA-binding protein. | Recombination protein F; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP; Belongs to the RecF family. | 0.918 |
L083_1374 | L083_3251 | L083_1374 | L083_3251 | Hypothetical protein. | Sugar kinase. | 0.904 |
L083_1374 | L083_5179 | L083_1374 | L083_5179 | Hypothetical protein. | Carbohydrate kinase; Belongs to the FGGY kinase family. | 0.915 |
L083_1374 | gnd | L083_1374 | L083_3829 | Hypothetical protein. | 6-phosphogluconate dehydrogenase; Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH. | 0.918 |
L083_1374 | gnd2 | L083_1374 | L083_0003 | Hypothetical protein. | 6-phosphogluconate dehydrogenase, decarboxylating. | 0.909 |
L083_1374 | pgl | L083_1374 | L083_2164 | Hypothetical protein. | 6-phosphogluconolactonase; Hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate. | 0.903 |
L083_1374 | zwf-4 | L083_1374 | L083_4919 | Hypothetical protein. | Glucose-6-phosphate 1-dehydrogenase; Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone. | 0.909 |
L083_3251 | L083_1374 | L083_3251 | L083_1374 | Sugar kinase. | Hypothetical protein. | 0.904 |
L083_3251 | L083_5179 | L083_3251 | L083_5179 | Sugar kinase. | Carbohydrate kinase; Belongs to the FGGY kinase family. | 0.927 |
L083_3251 | gnd | L083_3251 | L083_3829 | Sugar kinase. | 6-phosphogluconate dehydrogenase; Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH. | 0.923 |
L083_3251 | gnd2 | L083_3251 | L083_0003 | Sugar kinase. | 6-phosphogluconate dehydrogenase, decarboxylating. | 0.921 |
L083_3251 | pgl | L083_3251 | L083_2164 | Sugar kinase. | 6-phosphogluconolactonase; Hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate. | 0.912 |
L083_5179 | L083_1374 | L083_5179 | L083_1374 | Carbohydrate kinase; Belongs to the FGGY kinase family. | Hypothetical protein. | 0.915 |
L083_5179 | L083_3251 | L083_5179 | L083_3251 | Carbohydrate kinase; Belongs to the FGGY kinase family. | Sugar kinase. | 0.927 |
L083_5179 | gnd | L083_5179 | L083_3829 | Carbohydrate kinase; Belongs to the FGGY kinase family. | 6-phosphogluconate dehydrogenase; Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH. | 0.923 |
L083_5179 | gnd2 | L083_5179 | L083_0003 | Carbohydrate kinase; Belongs to the FGGY kinase family. | 6-phosphogluconate dehydrogenase, decarboxylating. | 0.921 |
L083_5179 | pgl | L083_5179 | L083_2164 | Carbohydrate kinase; Belongs to the FGGY kinase family. | 6-phosphogluconolactonase; Hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate. | 0.912 |
gnd | L083_1374 | L083_3829 | L083_1374 | 6-phosphogluconate dehydrogenase; Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH. | Hypothetical protein. | 0.918 |
gnd | L083_3251 | L083_3829 | L083_3251 | 6-phosphogluconate dehydrogenase; Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH. | Sugar kinase. | 0.923 |
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