Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
L083_0598 | L083_7255 | L083_0598 | L083_7255 | Hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | Hypothetical protein. | 0.582 |
L083_0598 | clpP-2 | L083_0598 | L083_1501 | Hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | Endopeptidase Clp; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family. | 0.783 |
L083_0598 | ptrB | L083_0598 | L083_0296 | Hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | Oligopeptidase B. | 0.580 |
L083_2132 | L083_5996 | L083_2132 | L083_5996 | Peptidase S14 family protein; Belongs to the peptidase S14 family. | Peptidase S14 ClpP; Belongs to the peptidase S14 family. | 0.714 |
L083_2132 | clpP-2 | L083_2132 | L083_1501 | Peptidase S14 family protein; Belongs to the peptidase S14 family. | Endopeptidase Clp; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family. | 0.910 |
L083_2132 | ptrB | L083_2132 | L083_0296 | Peptidase S14 family protein; Belongs to the peptidase S14 family. | Oligopeptidase B. | 0.654 |
L083_5996 | L083_2132 | L083_5996 | L083_2132 | Peptidase S14 ClpP; Belongs to the peptidase S14 family. | Peptidase S14 family protein; Belongs to the peptidase S14 family. | 0.714 |
L083_5996 | clp-2 | L083_5996 | L083_7181 | Peptidase S14 ClpP; Belongs to the peptidase S14 family. | Endopeptidase Clp; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family. | 0.725 |
L083_5996 | clpP | L083_5996 | L083_1500 | Peptidase S14 ClpP; Belongs to the peptidase S14 family. | Endopeptidase Clp; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family. | 0.721 |
L083_5996 | clpP-2 | L083_5996 | L083_1501 | Peptidase S14 ClpP; Belongs to the peptidase S14 family. | Endopeptidase Clp; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family. | 0.986 |
L083_5996 | ptrB | L083_5996 | L083_0296 | Peptidase S14 ClpP; Belongs to the peptidase S14 family. | Oligopeptidase B. | 0.719 |
L083_7255 | L083_0598 | L083_7255 | L083_0598 | Hypothetical protein. | Hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | 0.582 |
L083_7255 | L083_7941 | L083_7255 | L083_7941 | Hypothetical protein. | Hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | 0.582 |
L083_7255 | clpP-2 | L083_7255 | L083_1501 | Hypothetical protein. | Endopeptidase Clp; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family. | 0.835 |
L083_7255 | ptrB | L083_7255 | L083_0296 | Hypothetical protein. | Oligopeptidase B. | 0.597 |
L083_7941 | L083_7255 | L083_7941 | L083_7255 | Hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | Hypothetical protein. | 0.582 |
L083_7941 | clpP-2 | L083_7941 | L083_1501 | Hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | Endopeptidase Clp; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family. | 0.783 |
L083_7941 | ptrB | L083_7941 | L083_0296 | Hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | Oligopeptidase B. | 0.580 |
clp | clpP-2 | L083_3709 | L083_1501 | Endopeptidase Clp; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family. | Endopeptidase Clp; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family. | 0.957 |
clp | ptrB | L083_3709 | L083_0296 | Endopeptidase Clp; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family. | Oligopeptidase B. | 0.719 |
page 1 of 3