Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
L083_2000ATPase. (349 aa)    
Predicted Functional Partners:
L083_1999
Hypothetical protein.
 
  
 0.945
L083_1998
Transglutaminase domain-containing protein.
 
   
 0.944
L083_0269
Hypothetical protein.
 
  
 0.661
L083_2410
Hypothetical protein.
 
  
 0.617
L083_1730
Hypothetical protein.
 
  
 0.453
L083_2409
Transglutaminase domain-containing protein.
 
   
 0.436
Your Current Organism:
Actinoplanes sp. N902109
NCBI taxonomy Id: 649831
Other names: A. sp. N902-109, Actinoplanes sp. N902-109
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