STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
L083_4161Oxidoreductase. (384 aa)    
Predicted Functional Partners:
L083_4163
Xylose isomerase domain-containing protein.
 
    0.986
L083_4162
Hypothetical protein.
 
     0.980
L083_3784
Oxidoreductase domain-containing protein.
  
     0.652
L083_4160
LacI family transcriptional regulator.
       0.643
L083_3783
Hypothetical protein.
  
     0.629
L083_3790
Family 1 extracellular solute-binding protein.
  
     0.619
L083_3788
Oxidoreductase domain-containing protein.
  
     0.575
iolB
Myo-inositol catabolism IolB domain-containing protein.
 
  
 0.553
L083_6343
Xylose isomerase domain-containing protein TIM barrel.
 
    0.533
iolD
Acetolactate synthase; Belongs to the TPP enzyme family.
  
  
 0.496
Your Current Organism:
Actinoplanes sp. N902109
NCBI taxonomy Id: 649831
Other names: A. sp. N902-109, Actinoplanes sp. N902-109
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