STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
choDCholesterol oxidase. (544 aa)    
Predicted Functional Partners:
L083_2883
Cholesterol oxidase.
  
  
 
0.927
qcrC
Cytochrome c, class I.
   
 
 0.653
L083_2882
Cytochrome P450 CYP109D1.
     
 0.534
L083_2838
3-beta hydroxysteroid dehydrogenase/isomerase.
      
 0.516
L083_6593
Hypothetical protein.
   
 0.512
L083_5573
Non-ribosomal peptide synthase; Belongs to the ATP-dependent AMP-binding enzyme family.
     
 0.496
L083_6597
Hypothetical protein.
       0.459
L083_6595
Hypothetical protein.
       0.453
L083_3199
Acyltransferase-like protein.
  
   
 0.428
vgb
Virginiamycin B lyase; Inactivates the type B streptogramin antibiotics by linearizing the lactone ring at the ester linkage, generating a free phenylglycine carboxylate and converting the threonyl moiety into 2- amino-butenoic acid.
  
   
 0.428
Your Current Organism:
Actinoplanes sp. N902109
NCBI taxonomy Id: 649831
Other names: A. sp. N902-109, Actinoplanes sp. N902-109
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.