Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
L083_3939 | L083_6734 | L083_3939 | L083_6734 | Aminoglycoside phosphotransferase. | Hypothetical protein. | 0.462 |
L083_5463 | L083_6734 | L083_5463 | L083_6734 | Hypothetical protein. | Hypothetical protein. | 0.431 |
L083_6734 | L083_3939 | L083_6734 | L083_3939 | Hypothetical protein. | Aminoglycoside phosphotransferase. | 0.462 |
L083_6734 | L083_5463 | L083_6734 | L083_5463 | Hypothetical protein. | Hypothetical protein. | 0.431 |
L083_6734 | L083_6735 | L083_6734 | L083_6735 | Hypothetical protein. | MazG nucleotide pyrophosphohydrolase. | 0.425 |
L083_6734 | lexA-2 | L083_6734 | L083_6733 | Hypothetical protein. | lexA family transcriptional repressor; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. | 0.481 |
L083_6734 | ribBA | L083_6734 | L083_5908 | Hypothetical protein. | Bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family. | 0.430 |
L083_6735 | L083_6734 | L083_6735 | L083_6734 | MazG nucleotide pyrophosphohydrolase. | Hypothetical protein. | 0.425 |
lexA-2 | L083_6734 | L083_6733 | L083_6734 | lexA family transcriptional repressor; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. | Hypothetical protein. | 0.481 |
ribBA | L083_6734 | L083_5908 | L083_6734 | Bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family. | Hypothetical protein. | 0.430 |