Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
L083_7560 | L083_7562 | L083_7560 | L083_7562 | ABC transporter. | Hypothetical protein. | 0.697 |
L083_7560 | L083_7564 | L083_7560 | L083_7564 | ABC transporter. | Hypothetical protein. | 0.503 |
L083_7560 | ispE | L083_7560 | L083_7561 | ABC transporter. | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol. | 0.858 |
L083_7560 | ksgA | L083_7560 | L083_7563 | ABC transporter. | KsgA/Dim1 family 16S ribosomal RNA methyltransferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | 0.919 |
L083_7562 | L083_7560 | L083_7562 | L083_7560 | Hypothetical protein. | ABC transporter. | 0.697 |
L083_7562 | L083_7564 | L083_7562 | L083_7564 | Hypothetical protein. | Hypothetical protein. | 0.553 |
L083_7562 | ispE | L083_7562 | L083_7561 | Hypothetical protein. | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol. | 0.778 |
L083_7562 | ksgA | L083_7562 | L083_7563 | Hypothetical protein. | KsgA/Dim1 family 16S ribosomal RNA methyltransferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | 0.773 |
L083_7564 | L083_7560 | L083_7564 | L083_7560 | Hypothetical protein. | ABC transporter. | 0.503 |
L083_7564 | L083_7562 | L083_7564 | L083_7562 | Hypothetical protein. | Hypothetical protein. | 0.553 |
L083_7564 | ispE | L083_7564 | L083_7561 | Hypothetical protein. | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol. | 0.553 |
L083_7564 | ksgA | L083_7564 | L083_7563 | Hypothetical protein. | KsgA/Dim1 family 16S ribosomal RNA methyltransferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | 0.557 |
ispE | L083_7560 | L083_7561 | L083_7560 | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol. | ABC transporter. | 0.858 |
ispE | L083_7562 | L083_7561 | L083_7562 | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol. | Hypothetical protein. | 0.778 |
ispE | L083_7564 | L083_7561 | L083_7564 | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol. | Hypothetical protein. | 0.553 |
ispE | ksgA | L083_7561 | L083_7563 | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol. | KsgA/Dim1 family 16S ribosomal RNA methyltransferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | 0.993 |
ksgA | L083_7560 | L083_7563 | L083_7560 | KsgA/Dim1 family 16S ribosomal RNA methyltransferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | ABC transporter. | 0.919 |
ksgA | L083_7562 | L083_7563 | L083_7562 | KsgA/Dim1 family 16S ribosomal RNA methyltransferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | Hypothetical protein. | 0.773 |
ksgA | L083_7564 | L083_7563 | L083_7564 | KsgA/Dim1 family 16S ribosomal RNA methyltransferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | Hypothetical protein. | 0.557 |
ksgA | ispE | L083_7563 | L083_7561 | KsgA/Dim1 family 16S ribosomal RNA methyltransferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol. | 0.993 |