Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
C3737_12365 | C3737_12375 | GCA_000813485_02023 | GCA_000813485_02021 | Unannotated protein. | Unannotated protein. | 0.788 |
C3737_12365 | GCA_000813485_02022 | GCA_000813485_02023 | GCA_000813485_02022 | Unannotated protein. | Unannotated protein. | 0.788 |
C3737_12365 | orn | GCA_000813485_02023 | GCA_000813485_02026 | Unannotated protein. | Unannotated protein; 3'-to-5' exoribonuclease specific for small oligoribonucleotides; Belongs to the oligoribonuclease family. | 0.503 |
C3737_12365 | psd | GCA_000813485_02023 | GCA_000813485_02024 | Unannotated protein. | Unannotated protein; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer). | 0.788 |
C3737_12365 | rsgA | GCA_000813485_02023 | GCA_000813485_02025 | Unannotated protein. | Unannotated protein; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily. | 0.690 |
C3737_12375 | C3737_12365 | GCA_000813485_02021 | GCA_000813485_02023 | Unannotated protein. | Unannotated protein. | 0.788 |
C3737_12375 | GCA_000813485_02022 | GCA_000813485_02021 | GCA_000813485_02022 | Unannotated protein. | Unannotated protein. | 0.788 |
C3737_12375 | orn | GCA_000813485_02021 | GCA_000813485_02026 | Unannotated protein. | Unannotated protein; 3'-to-5' exoribonuclease specific for small oligoribonucleotides; Belongs to the oligoribonuclease family. | 0.503 |
C3737_12375 | psd | GCA_000813485_02021 | GCA_000813485_02024 | Unannotated protein. | Unannotated protein; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer). | 0.788 |
C3737_12375 | rsgA | GCA_000813485_02021 | GCA_000813485_02025 | Unannotated protein. | Unannotated protein; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily. | 0.690 |
C3737_14190 | orn | GCA_000813485_00887 | GCA_000813485_02026 | Unannotated protein; Belongs to the GST superfamily. | Unannotated protein; 3'-to-5' exoribonuclease specific for small oligoribonucleotides; Belongs to the oligoribonuclease family. | 0.486 |
GCA_000813485_02022 | C3737_12365 | GCA_000813485_02022 | GCA_000813485_02023 | Unannotated protein. | Unannotated protein. | 0.788 |
GCA_000813485_02022 | C3737_12375 | GCA_000813485_02022 | GCA_000813485_02021 | Unannotated protein. | Unannotated protein. | 0.788 |
GCA_000813485_02022 | orn | GCA_000813485_02022 | GCA_000813485_02026 | Unannotated protein. | Unannotated protein; 3'-to-5' exoribonuclease specific for small oligoribonucleotides; Belongs to the oligoribonuclease family. | 0.503 |
GCA_000813485_02022 | psd | GCA_000813485_02022 | GCA_000813485_02024 | Unannotated protein. | Unannotated protein; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer). | 0.788 |
GCA_000813485_02022 | rsgA | GCA_000813485_02022 | GCA_000813485_02025 | Unannotated protein. | Unannotated protein; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily. | 0.690 |
cca | orn | GCA_000813485_01474 | GCA_000813485_02026 | Unannotated protein; Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate. Also shows phosphatase, 2'-nucleotidase and 2',3'-cyclic phosphodiesterase activities. These phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases. | Unannotated protein; 3'-to-5' exoribonuclease specific for small oligoribonucleotides; Belongs to the oligoribonuclease family. | 0.512 |
cca | pcnB | GCA_000813485_01474 | GCA_000813485_00533 | Unannotated protein; Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate. Also shows phosphatase, 2'-nucleotidase and 2',3'-cyclic phosphodiesterase activities. These phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases. | Unannotated protein; Adds poly(A) tail to the 3' end of many RNAs, which usually targets these RNAs for decay. Plays a significant role in the global control of gene expression, through influencing the rate of transcript degradation, and in the general RNA quality control. Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. | 0.578 |
cca | rnt | GCA_000813485_01474 | GCA_000813485_03451 | Unannotated protein; Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate. Also shows phosphatase, 2'-nucleotidase and 2',3'-cyclic phosphodiesterase activities. These phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases. | Unannotated protein; Trims short 3' overhangs of a variety of RNA species, leaving a one or two nucleotide 3' overhang. Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A). Also appears to be involved in tRNA biosynthesis. | 0.474 |
dnaQ | orn | GCA_000813485_00769 | GCA_000813485_02026 | Unannotated protein; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'- 5' exonuclease. | Unannotated protein; 3'-to-5' exoribonuclease specific for small oligoribonucleotides; Belongs to the oligoribonuclease family. | 0.667 |
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