Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
C3737_02715 | argA | GCA_000813485_03476 | GCA_000813485_01733 | Unannotated protein. | Unannotated protein; Belongs to the acetyltransferase family. ArgA subfamily. | 0.611 |
C3737_02715 | tsaB | GCA_000813485_03476 | GCA_000813485_02421 | Unannotated protein. | Unannotated protein. | 0.557 |
C3737_02715 | tsaC | GCA_000813485_03476 | GCA_000813485_02641 | Unannotated protein. | Unannotated protein; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Catalyzes the conversion of L-threonine, HCO(3)(-)/CO(2) and ATP to give threonylcarbamoyl-AMP (TC-AMP) as the acyladenylate intermediate, with the release of diphosphate. | 0.491 |
C3737_02715 | tsaD | GCA_000813485_03476 | GCA_000813485_01964 | Unannotated protein. | Unannotated protein; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family. | 0.559 |
C3737_12540 | tsaB | GCA_000813485_03865 | GCA_000813485_02421 | Unannotated protein. | Unannotated protein. | 0.995 |
C3737_12540 | tsaC | GCA_000813485_03865 | GCA_000813485_02641 | Unannotated protein. | Unannotated protein; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Catalyzes the conversion of L-threonine, HCO(3)(-)/CO(2) and ATP to give threonylcarbamoyl-AMP (TC-AMP) as the acyladenylate intermediate, with the release of diphosphate. | 0.756 |
C3737_12540 | tsaD | GCA_000813485_03865 | GCA_000813485_01964 | Unannotated protein. | Unannotated protein; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family. | 0.985 |
C3737_17370 | hemF | GCA_000813485_02639 | GCA_000813485_02642 | Unannotated protein. | Unannotated protein; Involved in the heme biosynthesis. Catalyzes the aerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen-III to yield the vinyl groups in protoporphyrinogen- IX. | 0.422 |
C3737_17370 | purE-2 | GCA_000813485_02639 | GCA_000813485_02640 | Unannotated protein. | Unannotated protein; Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR). | 0.643 |
C3737_17370 | tsaC | GCA_000813485_02639 | GCA_000813485_02641 | Unannotated protein. | Unannotated protein; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Catalyzes the conversion of L-threonine, HCO(3)(-)/CO(2) and ATP to give threonylcarbamoyl-AMP (TC-AMP) as the acyladenylate intermediate, with the release of diphosphate. | 0.499 |
GCA_000813485_01904 | argA | GCA_000813485_01904 | GCA_000813485_01733 | Unannotated protein. | Unannotated protein; Belongs to the acetyltransferase family. ArgA subfamily. | 0.611 |
GCA_000813485_01904 | tsaB | GCA_000813485_01904 | GCA_000813485_02421 | Unannotated protein. | Unannotated protein. | 0.557 |
GCA_000813485_01904 | tsaC | GCA_000813485_01904 | GCA_000813485_02641 | Unannotated protein. | Unannotated protein; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Catalyzes the conversion of L-threonine, HCO(3)(-)/CO(2) and ATP to give threonylcarbamoyl-AMP (TC-AMP) as the acyladenylate intermediate, with the release of diphosphate. | 0.491 |
GCA_000813485_01904 | tsaD | GCA_000813485_01904 | GCA_000813485_01964 | Unannotated protein. | Unannotated protein; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family. | 0.559 |
argA | C3737_02715 | GCA_000813485_01733 | GCA_000813485_03476 | Unannotated protein; Belongs to the acetyltransferase family. ArgA subfamily. | Unannotated protein. | 0.611 |
argA | GCA_000813485_01904 | GCA_000813485_01733 | GCA_000813485_01904 | Unannotated protein; Belongs to the acetyltransferase family. ArgA subfamily. | Unannotated protein. | 0.611 |
argA | tsaB | GCA_000813485_01733 | GCA_000813485_02421 | Unannotated protein; Belongs to the acetyltransferase family. ArgA subfamily. | Unannotated protein. | 0.562 |
argA | tsaC | GCA_000813485_01733 | GCA_000813485_02641 | Unannotated protein; Belongs to the acetyltransferase family. ArgA subfamily. | Unannotated protein; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Catalyzes the conversion of L-threonine, HCO(3)(-)/CO(2) and ATP to give threonylcarbamoyl-AMP (TC-AMP) as the acyladenylate intermediate, with the release of diphosphate. | 0.564 |
argA | tsaD | GCA_000813485_01733 | GCA_000813485_01964 | Unannotated protein; Belongs to the acetyltransferase family. ArgA subfamily. | Unannotated protein; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family. | 0.584 |
aroE | hemF | GCA_000813485_02643 | GCA_000813485_02642 | Unannotated protein; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA). | Unannotated protein; Involved in the heme biosynthesis. Catalyzes the aerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen-III to yield the vinyl groups in protoporphyrinogen- IX. | 0.675 |
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