STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001939075_01359Unannotated protein. (189 aa)    
Predicted Functional Partners:
GCA_001939075_00388
Unannotated protein.
 
  
 0.948
GCA_001939075_00541
Unannotated protein.
 
 
 0.853
GCA_001939075_01493
Unannotated protein.
  
  
 
0.841
GCA_001939075_00537
Unannotated protein.
  
 
 0.827
GCA_001939075_00471
Unannotated protein.
     
 0.806
GCA_001939075_00472
Unannotated protein.
     
 0.803
GCA_001939075_03088
Unannotated protein.
     
 0.803
GCA_001939075_01360
Unannotated protein.
       0.511
GCA_001939075_00412
Unannotated protein.
     
 0.482
GCA_001939075_01347
Unannotated protein.
     
 0.482
Your Current Organism:
Paenisporosarcina indica
NCBI taxonomy Id: 650093
Other names: JCM 15114, LMG 23933, LMG:23933, P. indica, Paenisporosarcina indica Reddy et al. 2013, Sporosarcina sp. PN2, strain PN2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.