STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001939075_03412Unannotated protein. (492 aa)    
Predicted Functional Partners:
GCA_001939075_03411
Unannotated protein.
  
    0.901
GCA_001939075_00459
Unannotated protein.
  
  
  0.862
GCA_001939075_02316
Unannotated protein.
    
  0.846
GCA_001939075_03500
Unannotated protein.
    
  0.846
GCA_001939075_03413
Unannotated protein.
  
    0.796
GCA_001939075_00689
Unannotated protein.
    
  0.731
GCA_001939075_01386
Unannotated protein.
    
  0.639
GCA_001939075_01533
Unannotated protein.
    
  0.639
GCA_001939075_01059
Unannotated protein.
   
 
 0.595
GCA_001939075_01122
Unannotated protein.
  
 
 0.571
Your Current Organism:
Paenisporosarcina indica
NCBI taxonomy Id: 650093
Other names: JCM 15114, LMG 23933, LMG:23933, P. indica, Paenisporosarcina indica Reddy et al. 2013, Sporosarcina sp. PN2, strain PN2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.